myRT

myRT report for GCA_003471065.1_ASM347106v1

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Seq: QRIE01000010.1 Prevotella copri strain AM22-2 AM22-2.Scaf10, whole genome shotgun sequence (70393 bp)
Overview 1 RT 1: 68386-70174 bp Neighborhood of RT #1 [68386, 70353] RVT-GII GIIM Feature: gene Location: 68386-68595 bp Feature: gene Location: 68546-68851 bp Feature: gene Location: 68947-70353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69289-69904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69289-69904 bp Feature: domain Description: GIIM Note: maturase Location: 69961-70174 bp Feature: domain Description: GIIM Note: maturase Location: 69961 -701 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRIE01000026.1 Prevotella copri strain AM22-2 AM22-2.Scaf26, whole genome shotgun sequence (44707 bp)
Overview 1 RT 1: 123-4151 bp Neighborhood of RT #1 [123, 4351] RVT-GII GIIM NptA thrS UMPK_like Feature: gene Location: 123-683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9-2 34 bp Feature: domain Description: GIIM Note: maturase Location: 291-504 bp Feature: domain Description: GIIM Note: maturase Location: 2 91-504 bp Feature: gene Location: 809-2518 bp Feature: domain Description: NptA Location: 824-2495 bp Feature: domain Description: NptA Location: 82 4-2 495 bp Feature: gene Location: 2690-4351 bp Feature: domain Description: thrS Location: 2705-3296 bp Feature: domain Description: thrS Location: 2 705-32 96 bp Feature: domain Description: UMPK_like Location: 3560-4151 bp Feature: domain Description: UMPK_like Location: 3560-4151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NptA (COG1283), thrS (TIGR00418), UMPK_like (cd02028)

Seq: QRIE01000004.1 Prevotella copri strain AM22-2 AM22-2.Scaf4, whole genome shotgun sequence (100341 bp)
Overview 1 RT 1: 32012-37847 bp Neighborhood of RT #1 [32012, 37849] GT4_Bme6-like DEAH_box_HrpB RVT-GII DUF4295 rpmG Feature: gene Location: 32012-32785 bp Feature: domain Description: GT4_Bme6-like Location: 32102-32393 bp Feature: domain Description: GT4_Bme6-like Location: 3 2102-3 23 93 bp Feature: gene Location: 32817-35393 bp Feature: domain Description: DEAH_box_HrpB Location: 32856-35388 bp Feature: domain Description: DEAH_box_HrpB Location: 3 2856-3 53 88 bp Feature: gene Location: 35777-36934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36119-36737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 6119-3 673 7 bp Feature: gene Location: 37459-37617 bp Feature: domain Description: DUF4295 Location: 37465-37609 bp Feature: domain Description: DUF4295 Location: 3 7465-3 7609 bp Feature: gene Location: 37661-37849 bp Feature: domain Description: rpmG Location: 37673-37847 bp Feature: domain Description: rpmG Location: 3 7673 -3 7847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_Bme6-like (cd03821), DEAH_box_HrpB (TIGR01970), RVT-GII, DUF4295 (pfam14128), rpmG (PRK00595)

Seq: QRIE01000080.1 Prevotella copri strain AM22-2 AM22-2.Scaf80, whole genome shotgun sequence (14711 bp)
Overview 1 RT 1: 575-3744 bp Neighborhood of RT #1 [575, 3744] RVT-UG27 DpnD-PcfM Feature: gene Location: 575-721 bp Feature: gene Location: 1044-1184 bp Feature: gene Location: 1907-3172 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2099-2732 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 2099-2732 bp Feature: gene Location: 3221-3448 bp Feature: domain Description: DpnD-PcfM Location: 3233-3365 bp Feature: domain Description: DpnD-PcfM Location: 3233-3365 bp Feature: gene Location: 3505-3744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DpnD-PcfM (pfam14207)