myRT

myRT report for GCA_003471085.1_ASM347108v1

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Seq: QRIF01000011.1 Prevotella copri strain AM22-19 AM22-19.Scaf11, whole genome shotgun sequence (79255 bp)
Overview 1 RT 1: 64355-67524 bp Neighborhood of RT #1 [64355, 67524] RVT-UG27 DpnD-PcfM Feature: gene Location: 64355-64501 bp Feature: gene Location: 64827-64964 bp Feature: gene Location: 65687-66952 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 65879-66512 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 65879-6651 2 bp Feature: gene Location: 67001-67228 bp Feature: domain Description: DpnD-PcfM Location: 67013-67145 bp Feature: domain Description: DpnD-PcfM Location: 6701 3-671 45 bp Feature: gene Location: 67285-67524 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DpnD-PcfM (pfam14207)

Seq: QRIF01000004.1 Prevotella copri strain AM22-19 AM22-19.Scaf4, whole genome shotgun sequence (100248 bp)
Overview 1 RT 1: 62475-67502 bp Neighborhood of RT #1 [62475, 67507] rpmG DUF4295 RVT-GII DEAH_box_HrpB Feature: gene Location: 62475-62663 bp Feature: domain Description: rpmG Location: 62487-62661 bp Feature: domain Description: rpmG Location: 62 487-62 661 bp Feature: gene Location: 62707-62865 bp Feature: domain Description: DUF4295 Location: 62713-62857 bp Feature: domain Description: DUF42 95 Location: 62 713-62 857 bp Feature: gene Location: 63390-64547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63732-64350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63732 -64350 bp Feature: gene Location: 64600-64794 bp Feature: gene Location: 64931-67507 bp Feature: domain Description: DEAH_box_HrpB Location: 64970-67502 bp Feature: domain Description: DEAH_box_HrpB Location: 64970-67502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpmG (PRK00595), DUF4295 (pfam14128), RVT-GII, DEAH_box_HrpB (TIGR01970)

Seq: QRIF01000006.1 Prevotella copri strain AM22-19 AM22-19.Scaf6, whole genome shotgun sequence (92969 bp)
Overview 1 RT 1: 46809-52654 bp Neighborhood of RT #1 [46809, 52654] thrS UMPK_like NptA RVT-GII GIIM Feature: gene Location: 46809-48470 bp Feature: domain Description: thrS Location: 46824-47415 bp Feature: domain Description: thrS Location: 46824-47415 bp Feature: domain Description: UMPK_like Location: 47679-48270 bp Feature: domain Description: UMPK_like Location: 47679-48270 bp Feature: gene Location: 48642-50351 bp Feature: domain Description: NptA Location: 48657-50328 bp Feature: domain Description: NptA Location: 48657-503 28 bp Feature: gene Location: 50477-51883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50819-51434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50819-5143 4 bp Feature: domain Description: GIIM Note: maturase Location: 51491-51704 bp Feature: domain Description: GIIM Note: maturase Location: 51491-51704 bp Feature: gene Location: 51929-52069 bp Feature: gene Location: 52499-52654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT thrS (TIGR00418), UMPK_like (cd02028), NptA (COG1283), RVT-GII, GIIM (pfam08388)