myRT

myRT report for GCA_003471095.1_ASM347109v1

Download annotations/find similar RTs

Seq: QRII01000116.1 Escherichia coli strain AM22-15AC AM22-15AC.Scaf116, whole genome shotgun sequence (9523 bp)
Overview 1 RT 1: 124-2592 bp Neighborhood of RT #1 [124, 2765] PHA02517 RVT-GII HTH_LacI PBP1_RegR_EndR_KdgR_like AP_endonuc_2 Feature: gene Location: 124-411 bp Feature: domain Description: PHA02517 Location: 127-388 bp Feature: domain Description: PHA0251 7 Location: 1 27-388 bp Feature: gene Location: 453-680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459-594 bp Feature: gene Location: 900-1916 bp Feature: domain Description: HTH_LacI Location: 933-1086 bp Feature: domain Description: HTH_LacI Location: 933-1 086 bp Feature: domain Description: PBP1_RegR_EndR_KdgR_like Location: 1101-1899 bp Feature: domain Description: PBP1 _RegR_EndR_KdgR_like Location: 1 1 01 -1 899 bp Feature: gene Location: 2016-2765 bp Feature: domain Description: AP_endonuc_2 Location: 2358-2592 bp Feature: domain Description: AP_endonuc_2 Location: 2358-2592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), AP_endonuc_2 (pfam01261), RVT-GII, HTH_LacI (cd01392), PBP1_RegR_EndR_KdgR_like

Seq: QRII01000127.1 Escherichia coli strain AM22-15AC AM22-15AC.Scaf127, whole genome shotgun sequence (7348 bp)
Overview 1 RT 1: 162-2936 bp Neighborhood of RT #1 [162, 2936] RAYT RVT-GII GIIM Feature: gene Location: 162-701 bp Feature: domain Description: RAYT Location: 240-603 bp Feature: domain Description: RAYT Location: 2 40-603 bp Feature: gene Location: 855-2201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1809-2040 bp Feature: domain Description: GIIM Note: maturase Location: 1809-2 040 bp Feature: gene Location: 2232-2429 bp Feature: gene Location: 2793-2936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), RVT-GII, GIIM (pfam08388)

Seq: QRII01000174.1 Escherichia coli strain AM22-15AC AM22-15AC.Scaf174, whole genome shotgun sequence (2274 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRII01000005.1 Escherichia coli strain AM22-15AC AM22-15AC.Scaf5, whole genome shotgun sequence (113410 bp)
Overview 1 RT 1: 12996-18213 bp Neighborhood of RT #1 [12996, 18213] P Q RVT-Retrons Feature: gene Location: 12996-14762 bp Feature: domain Description: P Location: 13023-14757 bp Feature: domain Description: P Location: 13023-14 757 bp Feature: gene Location: 14762-15790 bp Feature: domain Description: Q Location: 14768-15785 bp Feature: domain Description: Q Location: 14 768-15785 bp Feature: gene Location: 15810-16787 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16050-16599 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16050-16599 bp Feature: gene Location: 16812-16964 bp Feature: gene Location: 17689-18213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons