myRT

myRT report for GCA_003471525.1_ASM347152v1

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Seq: QRJK01000014.1 Bacteroides eggerthii strain AM18-17 AM18-17.Scaf14, whole genome shotgun sequence (28724 bp)
Overview 1 RT 1: 24796-28710 bp Neighborhood of RT #1 [24796, 28710] Bac_Flav_CT_J RVT-GII matK HNHc Feature: gene Location: 24796-25800 bp Feature: domain Description: Bac_Flav_CT_J Location: 24802-25771 bp Feature: domain Description: Bac_Flav_CT_J Location: 24802-25771 bp Feature: gene Location: 25804-26340 bp Feature: gene Location: 26333-28168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26627-27449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26627-27449 bp Feature: domain Description: matK Location: 27626-27839 bp Feature: domain Description: matK Location: 27626-27839 bp Feature: domain Description: HNHc Note: nucleases Location: 28001-28142 bp Feature: domain Description: HNHc Note: nucleases Location: 28001 -281 42 bp Feature: gene Location: 28570-28710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, matK (CHL00002), HNHc (smart00507)

Seq: QRJK01000005.1 Bacteroides eggerthii strain AM18-17 AM18-17.Scaf5, whole genome shotgun sequence (364572 bp)
Overview 1 RT 1: 74751-85629 bp 2 RT 2: 317792-322981 bp Neighborhood of RT #1 [74751, 86198] RVT-UG8 RVT-UG3 INTN1_C_like Neighborhood of RT #2 [317792, 322995] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 74751-76643 bp Feature: gene Location: 76983-77225 bp Feature: gene Location: 78969-80888 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 79476-79911 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 79476-79911 bp Feature: gene Location: 80885-82183 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 81245-81716 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 812 45-81716 bp Feature: gene Location: 83697-83840 bp Feature: gene Location: 84339-86198 bp Feature: domain Description: INTN1_C_like Location: 85095-85629 bp Feature: domain Description: INTN1_C_like Location: 85095-8562 9 bp Feature: gene Location: 317792-318106 bp Feature: domain Description: DUF3876 Location: 317846-318095 bp Feature: domain Description: DUF3876 Location: 317846-318095 bp Feature: gene Location: 318121-319815 bp Feature: domain Description: Bac_Flav_CT_G Location: 318241-319807 bp Feature: domain Description: Bac_Flav_CT_G Location: 3182 41-319807 bp Feature: gene Location: 319812-321473 bp Feature: domain Description: RVT_N Location: 319866-320109 bp Feature: domain Description: RVT_N Location: 319866-32 0109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320154-320802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 0154-32 0802 bp Feature: domain Description: GIIM Note: maturase Location: 320856-321087 bp Feature: domain Description: GIIM Note: maturase Location: 32 0856-32 1087 bp Feature: gene Location: 321558-321935 bp Feature: gene Location: 322057-322995 bp Feature: domain Description: Bac_Flav_CT_G Location: 322060-322981 bp Feature: domain Description: Bac_Flav_CT_G Location: 32 2 060-32 2 981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, INTN1_C_like (cd01185), DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)