myRT

myRT report for GCA_003471645.1_ASM347164v1

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Seq: QRJS01000001.1 Bacteroides plebeius strain AM17-44 AM17-44.Scaf1, whole genome shotgun sequence (216445 bp)
Overview 1 RT 1: 351-5098 bp Neighborhood of RT #1 [351, 5112] COG3177 COG3177 RVT_N RVT-GII GIIM TDP2 Feature: gene Location: 351-917 bp Feature: domain Description: COG3177 Location: 402-900 bp Feature: domain Description: COG31 77 Location: 402-900 bp Feature: gene Location: 975-1175 bp Feature: domain Description: COG3177 Location: 993-1122 bp Feature: domain Description: COG31 77 Location: 993-1 1 22 bp Feature: gene Location: 1719-3374 bp Feature: RT Description: RVT_N Location: 1773-2016 bp Feature: RT Description: RVT_N Location: 1 773-201 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061-2706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 -2706 bp Feature: domain Description: GIIM Note: maturase Location: 2757-2991 bp Feature: domain Description: GIIM Note: maturase Location: 2757-2991 bp Feature: gene Location: 3448-3765 bp Feature: gene Location: 4081-5112 bp Feature: domain Description: TDP2 Location: 4156-5098 bp Feature: domain Description: TDP2 Location: 41 56-5098 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3177 (Fic family protein )

Seq: QRJS01000015.1 Bacteroides plebeius strain AM17-44 AM17-44.Scaf15, whole genome shotgun sequence (76664 bp)
Overview 1 RT 1: 34883-40205 bp Neighborhood of RT #1 [34883, 44326] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 34883-35125 bp Feature: gene Location: 35305-35790 bp Feature: gene Location: 35787-37091 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36000-36594 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36000-36594 bp Feature: gene Location: 37193-37411 bp Feature: gene Location: 37607-44326 bp Feature: domain Description: Laminin_G_3 Location: 39050-39128 bp Feature: domain Description: Laminin_G_3 Location: 39050-3912 8 bp Feature: domain Description: Laminin_G_3 Location: 39779-40205 bp Feature: domain Description: Laminin_G_3 Location: 39779-402 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QRJS01000076.1 Bacteroides plebeius strain AM17-44 AM17-44.Scaf76, whole genome shotgun sequence (4773 bp)
Overview 1 RT 1: 3-3997 bp Neighborhood of RT #1 [3, 4212] RVT-GII GIIM Lipid_bd SusD-like_2 Feature: gene Location: 3-143 bp Feature: gene Location: 218-1618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-1169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 554-1169 bp Feature: domain Description: GIIM Note: maturase Location: 1223-1454 bp Feature: domain Description: GIIM Note: maturase Location: 1223 -1454 bp Feature: gene Location: 2104-2631 bp Feature: domain Description: Lipid_bd Location: 2269-2629 bp Feature: domain Description: Lipid_bd Location: 2269-2629 bp Feature: gene Location: 2662-4212 bp Feature: domain Description: SusD-like_2 Location: 2767-3997 bp Feature: domain Description: SusD-like_2 Location: 2767-3 997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipid_bd (pfam12888), RVT-GII, GIIM (pfam08388), SusD-like_2 (pfam12771)