myRT

myRT report for GCA_003471885.1_ASM347188v1

Download annotations/find similar RTs

Seq: QRKI01000004.1 Bacteroides sp. AM16-24 AM16-24.Scaf4, whole genome shotgun sequence (329613 bp)
Overview 1 RT 1: 9183-14423 bp Neighborhood of RT #1 [9183, 14629] COG3943 RVT-UG2 HTH_17 DUF3987 Feature: gene Location: 9183-9545 bp Feature: domain Description: COG3943 Location: 9225-9480 bp Feature: domain Description: COG3943 Location: 9225-9480 bp Feature: gene Location: 9814-10701 bp Feature: gene Location: 10713-12296 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 10950-11910 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 0950-1 1 91 0 bp Feature: gene Location: 12876-13241 bp Feature: domain Description: HTH_17 Location: 13011-13149 bp Feature: domain Description: HTH_1 7 Location: 1 301 1 -1 31 49 bp Feature: gene Location: 13253-14629 bp Feature: domain Description: DUF3987 Location: 13403-14423 bp Feature: domain Description: DUF3987 Location: 1 3403-1 4423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-UG2, HTH_17 (pfam12728), DUF3987 (pfam13148)

Seq: QRKI01000046.1 Bacteroides sp. AM16-24 AM16-24.Scaf46, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 118-1588 bp Neighborhood of RT #1 [118, 1920] matK RVT-GII Intron_maturas2 Feature: gene Location: 118-1920 bp Feature: domain Description: matK Location: 187-274 bp Feature: domain Description: matK Location: 187-2 74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 -12 04 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRKI01000005.1 Bacteroides sp. AM16-24 AM16-24.Scaf5, whole genome shotgun sequence (326247 bp)
Overview 1 RT 1: 304049-308864 bp Neighborhood of RT #1 [304049, 308920] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 304049-304180 bp Feature: gene Location: 304203-304796 bp Feature: domain Description: Bac_Flav_CT_G Location: 304320-304779 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 043 20-3 04779 bp Feature: gene Location: 304805-306451 bp Feature: domain Description: RVT_N Location: 304859-305102 bp Feature: domain Description: RVT_N Location: 3 04859-3 05102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305147-305792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 05147-3 05792 bp Feature: domain Description: GIIM Note: maturase Location: 305846-306077 bp Feature: domain Description: GIIM Note: maturase Location: 3 05846-3 06077 bp Feature: gene Location: 306534-306695 bp Feature: gene Location: 307022-308920 bp Feature: domain Description: Bac_Flav_CT_G Location: 307028-308864 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 07028-3 08864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)