myRT

myRT report for GCA_003471925.1_ASM347192v1

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Seq: QRKL01000001.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf1, whole genome shotgun sequence (795779 bp)
Overview 1 RT 1: 709632-714359 bp Neighborhood of RT #1 [709632, 714359] YurZ QdoI PRK07116 RVT-CRISPR-like Feature: gene Location: 709632-710450 bp Feature: domain Description: YurZ Location: 709707-710019 bp Feature: domain Description: YurZ Location: 709707-71 001 9 bp Feature: domain Description: QdoI Location: 710097-710418 bp Feature: domain Description: QdoI Location: 71 0097-71 041 8 bp Feature: gene Location: 710464-711033 bp Feature: domain Description: PRK07116 Location: 710560-711028 bp Feature: domain Description: PRK071 1 6 Location: 71 0560-71 1 028 bp Feature: gene Location: 711443-712648 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 711629-712292 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 71 1 629-71 2292 bp Feature: gene Location: 712772-714067 bp Feature: gene Location: 714057-714359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YurZ (COG0599), QdoI (COG1917), PRK07116 (flavodoxin; Provisional), RVT-CRISPR

Seq: QRKL01000010.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf10, whole genome shotgun sequence (190012 bp)
Overview 1 RT 1: 75525-84489 bp Neighborhood of RT #1 [75525, 84491] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 75525-76439 bp Feature: domain Description: RNase_Z Location: 75540-76431 bp Feature: domain Description: RNase_Z Location: 75540-76431 bp Feature: gene Location: 76589-78382 bp Feature: domain Description: rpsA Location: 76667-78275 bp Feature: domain Description: rpsA Location: 76667-782 75 bp Feature: gene Location: 78524-79636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78839-79388 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 78839-79388 bp Feature: gene Location: 79843-82062 bp Feature: gene Location: 82302-84491 bp Feature: domain Description: GlnA3 Location: 82377-84489 bp Feature: domain Description: GlnA3 Location: 82 377-84489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: QRKL01000018.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf18, whole genome shotgun sequence (84212 bp)
Overview 1 RT 1: 69417-78943 bp Neighborhood of RT #1 [69417, 80148] DUF4065 N6_Mtase COG4646 RVT_N RVT-GII GIIM KAP_NTPase KAP_NTPase Feature: gene Location: 69417-69974 bp Feature: domain Description: DUF4065 Location: 69507-69834 bp Feature: domain Description: DUF4065 Location: 69507-6983 4 bp Feature: gene Location: 70573-74610 bp Feature: domain Description: N6_Mtase Location: 71065-71479 bp Feature: domain Description: N6_Mtase Location: 71065-71479 bp Feature: domain Description: COG4646 Location: 72262-74005 bp Feature: domain Description: COG4646 Location: 72262-74005 bp Feature: gene Location: 75268-76941 bp Feature: domain Description: RVT_N Location: 75322-75565 bp Feature: domain Description: RVT_N Location: 753 22-75565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75610-76258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75610-76258 bp Feature: domain Description: GIIM Note: maturase Location: 76312-76543 bp Feature: domain Description: GIIM Note: maturase Location: 763 12-76543 bp Feature: gene Location: 76920-78017 bp Feature: gene Location: 78259-80148 bp Feature: domain Description: KAP_NTPase Location: 78307-78397 bp Feature: domain Description: KAP_NTPase Location: 783 07-783 97 bp Feature: domain Description: KAP_NTPase Location: 78667-78943 bp Feature: domain Description: KAP_NTPase Location: 78667-78943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4065 (pfam13274), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KAP_NTPase (pfam07693)

Seq: QRKL01000003.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf3, whole genome shotgun sequence (461876 bp)
Overview 1 RT 1: 131403-133419 bp Neighborhood of RT #1 [131403, 133419] RVT-GII HTH_28 Feature: gene Location: 131403-131765 bp Feature: gene Location: 131769-131978 bp Feature: gene Location: 132008-132205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132011-132203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132011-132203 bp Feature: gene Location: 132326-132616 bp Feature: domain Description: HTH_28 Location: 132350-132497 bp Feature: domain Description: HTH_28 Location: 132350-1324 97 bp Feature: gene Location: 133045-133419 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QRKL01000032.1 Bacteroides fragilis strain AM16-16A AM16-16A.Scaf32, whole genome shotgun sequence (2402 bp)
Overview 1 RT 1: 633-1905 bp Neighborhood of RT #1 [633, 2279] RVT_N RVT-GII GIIM Feature: gene Location: 633-2279 bp Feature: domain Description: RVT_N Location: 687-930 bp Feature: domain Description: RVT_N Location: 687-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975 -1620 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)