myRT

myRT report for GCA_003472025.1_ASM347202v1

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Seq: QRKP01000001.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf1, whole genome shotgun sequence (796128 bp)
Overview 1 RT 1: 710028-714755 bp Neighborhood of RT #1 [710028, 714755] YurZ QdoI PRK07116 RVT-CRISPR-like Feature: gene Location: 710028-710846 bp Feature: domain Description: YurZ Location: 710103-710415 bp Feature: domain Description: YurZ Location: 71 01 03-71 041 5 bp Feature: domain Description: QdoI Location: 710493-710814 bp Feature: domain Description: QdoI Location: 71 0493-71 081 4 bp Feature: gene Location: 710860-711429 bp Feature: domain Description: PRK07116 Location: 710956-711424 bp Feature: domain Description: PRK071 1 6 Location: 71 0956-71 1 424 bp Feature: gene Location: 711839-713044 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 712025-712688 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 71 2025-71 2688 bp Feature: gene Location: 713168-714463 bp Feature: gene Location: 714453-714755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YurZ (COG0599), QdoI (COG1917), PRK07116 (flavodoxin; Provisional), RVT-CRISPR

Seq: QRKP01000025.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf25, whole genome shotgun sequence (13853 bp)
Overview 1 RT 1: 4065-13035 bp Neighborhood of RT #1 [4065, 13640] KAP_NTPase KAP_NTPase RVT_N RVT-GII GIIM N6_Mtase COG4646 Feature: gene Location: 4065-5954 bp Feature: domain Description: KAP_NTPase Location: 4113-4203 bp Feature: domain Description: KAP_NTPase Location: 4113-42 03 bp Feature: domain Description: KAP_NTPase Location: 4473-4749 bp Feature: domain Description: KAP_NTPase Location: 4473-4749 bp Feature: gene Location: 6196-7293 bp Feature: gene Location: 7272-8945 bp Feature: domain Description: RVT_N Location: 7326-7569 bp Feature: domain Description: RVT_N Location: 732 6-7569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7614-8262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7614-82 62 bp Feature: domain Description: GIIM Note: maturase Location: 8316-8547 bp Feature: domain Description: GIIM Note: maturase Location: 8316-8547 bp Feature: gene Location: 8960-9238 bp Feature: gene Location: 9603-13640 bp Feature: domain Description: N6_Mtase Location: 10095-10509 bp Feature: domain Description: N6_Mtase Location: 10095-10509 bp Feature: domain Description: COG4646 Location: 11292-13035 bp Feature: domain Description: COG4646 Location: 112 92 -13035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QRKP01000033.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf33, whole genome shotgun sequence (2402 bp)
Overview 1 RT 1: 633-1905 bp Neighborhood of RT #1 [633, 2279] RVT_N RVT-GII GIIM Feature: gene Location: 633-2279 bp Feature: domain Description: RVT_N Location: 687-930 bp Feature: domain Description: RVT_N Location: 687-93 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 975-1620 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1674-1905 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRKP01000005.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf5, whole genome shotgun sequence (377111 bp)
Overview 1 RT 1: 131521-133537 bp Neighborhood of RT #1 [131521, 133537] RVT-GII HTH_28 Feature: gene Location: 131521-131883 bp Feature: gene Location: 131887-132096 bp Feature: gene Location: 132126-132323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132129-132321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132129-132321 bp Feature: gene Location: 132444-132734 bp Feature: domain Description: HTH_28 Location: 132468-132615 bp Feature: domain Description: HTH_28 Location: 1324 68-132615 bp Feature: gene Location: 133163-133537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QRKP01000008.1 Bacteroides fragilis strain AM15-16 AM15-16.Scaf8, whole genome shotgun sequence (328701 bp)
Overview 1 RT 1: 214214-223178 bp Neighborhood of RT #1 [214214, 223180] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 214214-215128 bp Feature: domain Description: RNase_Z Location: 214229-215120 bp Feature: domain Description: RNase_Z Location: 214229-215 120 bp Feature: gene Location: 215278-217071 bp Feature: domain Description: rpsA Location: 215356-216964 bp Feature: domain Description: rpsA Location: 215 35 6-216964 bp Feature: gene Location: 217213-218325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 217528-218077 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2175 28-218077 bp Feature: gene Location: 218532-220751 bp Feature: gene Location: 220991-223180 bp Feature: domain Description: GlnA3 Location: 221066-223178 bp Feature: domain Description: GlnA3 Location: 221066-223178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)