myRT

myRT report for GCA_003472055.1_ASM347205v1

Download annotations/find similar RTs

Seq: QRKS01000012.1 Bacteroides thetaiotaomicron strain AM15-10 AM15-10.Scaf12, whole genome shotgun sequence (163225 bp)
Overview 1 RT 1: 131163-138059 bp Neighborhood of RT #1 [131163, 138067] Bac_Flav_CT_J DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 131163-132164 bp Feature: domain Description: Bac_Flav_CT_J Location: 131190-132153 bp Feature: domain Description: Bac_Flav_CT_J Location: 1 31 1 90-1 321 53 bp Feature: gene Location: 132178-132804 bp Feature: domain Description: DUF4141 Location: 132190-132343 bp Feature: domain Description: DUF41 41 Location: 1 321 90-1 32343 bp Feature: gene Location: 133048-134871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133312-134134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3331 2-1 341 34 bp Feature: domain Description: Intron_maturas2 Location: 134308-134509 bp Feature: domain Description: Intron_maturas2 Location: 1 34308-1 34509 bp Feature: domain Description: HNHc Note: nucleases Location: 134662-134833 bp Feature: domain Description: HNHc Note: nucleases Location: 1 34662-1 34833 bp Feature: gene Location: 134926-135264 bp Feature: gene Location: 135419-138067 bp Feature: domain Description: Bac_Flav_CT_G Location: 135674-138059 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 35674-1 38059 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: QRKS01000003.1 Bacteroides thetaiotaomicron strain AM15-10 AM15-10.Scaf3, whole genome shotgun sequence (626055 bp)
Overview 1 RT 1: 228446-235891 bp 2 RT 2: 401293-410759 bp Neighborhood of RT #1 [228446, 235891] Glyco_hydro_88 group_II_RT_mat RVT-GII KOG4768 RVT-GII Intron_maturas2 Trehalase GDB1 Neighborhood of RT #2 [401293, 411964] DUF4065 N6_Mtase COG4646 RVT_N RVT-GII GIIM KAP_NTPase KAP_NTPase Feature: gene Location: 228446-229564 bp Feature: domain Description: Glyco_hydro_88 Location: 228638-229553 bp Feature: domain Description: Glyco_hydro_88 Location: 2 2 8638-2 2 9553 bp Feature: gene Location: 231105-231293 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 231111-231258 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 31111-2 312 58 bp Feature: gene Location: 231388-231531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231391-231511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 31391-2 31511 bp Feature: gene Location: 231602-231793 bp Feature: domain Description: KOG4768 Location: 231659-231791 bp Feature: domain Description: KOG4768 Location: 2 31659-2 31791 bp Feature: gene Location: 231833-232381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231839-231905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 31839-2 31905 bp Feature: domain Description: Intron_maturas2 Location: 231977-232286 bp Feature: domain Description: Intron_maturas2 Location: 2 31977-2 32 2 86 bp Feature: gene Location: 232776-235523 bp Feature: domain Description: Trehalase Location: 234213-234300 bp Feature: domain Description: Trehalase Location: 2 342 13-2 34300 bp Feature: domain Description: GDB1 Location: 234390-235119 bp Feature: domain Description: GDB1 Location: 2 34390-2 35119 bp Feature: gene Location: 235691-235891 bp Feature: gene Location: 401293-401850 bp Feature: domain Description: DUF4065 Location: 401383-401710 bp Feature: domain Description: DUF4065 Location: 401383-401710 bp Feature: gene Location: 402389-406426 bp Feature: domain Description: N6_Mtase Location: 402881-403295 bp Feature: domain Description: N6_Mtase Location: 402 881-4032 95 bp Feature: domain Description: COG4646 Location: 404078-405821 bp Feature: domain Description: COG4646 Location: 404078-40582 1 bp Feature: gene Location: 407084-408757 bp Feature: RT Description: RVT_N Location: 407138-407381 bp Feature: RT Description: RVT_N Location: 407138-407381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407426-408074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40742 6-408074 bp Feature: domain Description: GIIM Note: maturase Location: 408128-408359 bp Feature: domain Description: GIIM Note: maturase Location: 40812 8-408359 bp Feature: gene Location: 408736-409833 bp Feature: gene Location: 410075-411964 bp Feature: domain Description: KAP_NTPase Location: 410123-410213 bp Feature: domain Description: KAP_NTPase Location: 41012 3-4102 13 bp Feature: domain Description: KAP_NTPase Location: 410483-410759 bp Feature: domain Description: KAP_NTPase Location: 410483-410759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glyco_hydro_88 (pfam07470), group_II_RT_mat (TIGR04416), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Intron_maturas2 (pfam01348), Trehalase (pfam01204), GDB1 (COG3408), DUF4065 (pfam13274), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )
RVT_N (pfam13655), GIIM (pfam08388), KAP_NTPase (pfam07693)

Seq: QRKS01000005.1 Bacteroides thetaiotaomicron strain AM15-10 AM15-10.Scaf5, whole genome shotgun sequence (467537 bp)
Overview 1 RT 1: 453280-464798 bp Neighborhood of RT #1 [453280, 464914] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 453280-453456 bp Feature: gene Location: 453559-455745 bp Feature: gene Location: 455951-457084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 456275-456827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 456275-456827 bp Feature: gene Location: 457118-462946 bp Feature: domain Description: DUF4011 Location: 458273-458786 bp Feature: domain Description: DUF4011 Location: 458273 -458786 bp Feature: domain Description: DEXXQc_SF1 Location: 459125-459725 bp Feature: domain Description: DEXXQc_SF1 Location: 459125-459725 bp Feature: domain Description: DEXXQc_SF1 Location: 460562-461312 bp Feature: domain Description: DEXXQc_SF1 Location: 460562-4613 12 bp Feature: domain Description: TIGR00376 Location: 461444-461834 bp Feature: domain Description: TIGR003 76 Location: 461444-46183 4 bp Feature: domain Description: MTES_1575 Location: 461984-462272 bp Feature: domain Description: MTES_1575 Location: 461984-462272 bp Feature: domain Description: DUF3320 Location: 462452-462596 bp Feature: domain Description: DUF3 3 20 Location: 462452-462596 bp Feature: gene Location: 463115-464914 bp Feature: domain Description: rpsA Location: 463184-464798 bp Feature: domain Description: rpsA Location: 463 184-464798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QRKS01000008.1 Bacteroides thetaiotaomicron strain AM15-10 AM15-10.Scaf8, whole genome shotgun sequence (281871 bp)
Overview 1 RT 1: 132234-136108 bp Neighborhood of RT #1 [132234, 136122] DUF3872 Toprim_2 RVT-GII Intron_maturas2 dnaG Feature: gene Location: 132234-132740 bp Feature: domain Description: DUF3872 Location: 132285-132672 bp Feature: domain Description: DUF3872 Location: 132285-132672 bp Feature: gene Location: 132740-133621 bp Feature: domain Description: Toprim_2 Location: 133316-133568 bp Feature: domain Description: Toprim_2 Location: 133316-133568 bp Feature: gene Location: 133575-135383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133839-134661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133839-134 661 bp Feature: domain Description: Intron_maturas2 Location: 134730-135039 bp Feature: domain Description: Intron_maturas2 Location: 134 730-135039 bp Feature: gene Location: 135672-135815 bp Feature: gene Location: 135931-136122 bp Feature: domain Description: dnaG Location: 136009-136108 bp Feature: domain Description: dnaG Location: 136009-136108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3872 (pfam12988), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), dnaG (TIGR01391)