myRT

myRT report for GCA_003472085.1_ASM347208v1

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Seq: QRKT01000001.1 Bacteroides ovatus strain AM14-40 AM14-40.Scaf1, whole genome shotgun sequence (726101 bp)
Overview 1 RT 1: 357218-368595 bp 2 RT 2: 584720-587888 bp Neighborhood of RT #1 [357218, 368595] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Neighborhood of RT #2 [584720, 587920] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 357218-358363 bp Feature: domain Description: Arm-DNA-bind_5 Location: 357242-357488 bp Feature: domain Description: Arm-DNA-bind_5 Location: 357242-357488 bp Feature: domain Description: Phage_int_SAM_5 Location: 357527-357812 bp Feature: domain Description: Phage_int_SAM_5 Location: 357527-35781 2 bp Feature: domain Description: INTN1_C_like Location: 357851-358325 bp Feature: domain Description: INTN1 _C_like Location: 357851 -358325 bp Feature: gene Location: 358415-358909 bp Feature: gene Location: 358911-360266 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 359187-359778 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3591 87-359778 bp Feature: gene Location: 360640-367428 bp Feature: domain Description: Laminin_G_3 Location: 363076-363457 bp Feature: domain Description: Laminin_G_3 Location: 363076-363457 bp Feature: domain Description: CotH Location: 363721-364765 bp Feature: domain Description: CotH Location: 363721 -364765 bp Feature: domain Description: LRR_AMN1 Location: 365182-365644 bp Feature: domain Description: LRR_AMN1 Location: 3651 82-365644 bp Feature: gene Location: 367438-368595 bp Feature: gene Location: 584720-584965 bp Feature: gene Location: 584949-585455 bp Feature: gene Location: 585523-587013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 585916-586513 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 58591 6-58651 3 bp Feature: gene Location: 587260-587571 bp Feature: domain Description: HTH_XRE Location: 587374-587527 bp Feature: domain Description: HTH_XRE Location: 587374-587527 bp Feature: gene Location: 587576-587920 bp Feature: domain Description: Gp49 Location: 587630-587888 bp Feature: domain Description: Gp49 Location: 587630-587888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QRKT01000010.1 Bacteroides ovatus strain AM14-40 AM14-40.Scaf10, whole genome shotgun sequence (245207 bp)
Overview 1 RT 1: 87660-92369 bp 2 RT 2: 125725-128191 bp Neighborhood of RT #1 [87660, 92383] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [125725, 128191] HTH_23 COG4584 HTH_28 RVT-GII Feature: gene Location: 87660-87833 bp Feature: domain Description: Bac_Flav_CT_G Location: 87663-87819 bp Feature: domain Description: Bac_Flav_CT_G Location: 87663-87819 bp Feature: gene Location: 87840-88118 bp Feature: domain Description: Bac_Flav_CT_G Location: 87858-88116 bp Feature: domain Description: Bac_Flav_CT_G Location: 87858-88116 bp Feature: gene Location: 88196-90028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88481-89303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88481-89303 bp Feature: domain Description: Intron_maturas2 Location: 89378-89684 bp Feature: domain Description: Intron_maturas2 Location: 89378-89684 bp Feature: domain Description: HNHc Note: nucleases Location: 89834-89999 bp Feature: domain Description: HNHc Note: nucleases Location: 89834-89999 bp Feature: gene Location: 90353-90526 bp Feature: gene Location: 90554-92383 bp Feature: domain Description: Bac_Flav_CT_G Location: 90557-92369 bp Feature: domain Description: Bac_Flav_CT_G Location: 90557-92 369 bp Feature: gene Location: 125725-126831 bp Feature: domain Description: HTH_23 Location: 125749-125872 bp Feature: domain Description: HTH_2 3 Location: 12 5749-12 5872 bp Feature: domain Description: COG4584 Location: 125986-126574 bp Feature: domain Description: COG4584 Location: 12 5986-12 6574 bp Feature: gene Location: 126993-127268 bp Feature: domain Description: HTH_28 Location: 127017-127164 bp Feature: domain Description: HTH_2 8 Location: 12 7017-12 7164 bp Feature: gene Location: 127389-127586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127392-127584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7392 -12 7584 bp Feature: gene Location: 127616-127825 bp Feature: gene Location: 127829-128191 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_23 (pfam13384), COG4584 (Transposase ), HTH_28 (pfam13518)

Seq: QRKT01000026.1 Bacteroides ovatus strain AM14-40 AM14-40.Scaf26, whole genome shotgun sequence (77991 bp)
Overview 1 RT 1: 684-12960 bp Neighborhood of RT #1 [684, 13076] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 684-1508 bp Feature: domain Description: PDDEXK_2 Location: 705-1383 bp Feature: domain Description: PDDEXK_2 Location: 705-13 83 bp Feature: gene Location: 1675-3882 bp Feature: gene Location: 4088-5218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4409-4952 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4409-4952 bp Feature: gene Location: 5220-11177 bp Feature: domain Description: DUF4011 Location: 6450-6963 bp Feature: domain Description: DUF4011 Location: 6450-6963 bp Feature: domain Description: DEXXQc_SF1 Location: 7302-8268 bp Feature: domain Description: DEXXQc_SF1 Location: 73 02-8268 bp Feature: domain Description: DEXXQc_SF1 Location: 8730-9489 bp Feature: domain Description: DEXXQc_SF1 Location: 873 0-9489 bp Feature: domain Description: TIGR00376 Location: 9621-10008 bp Feature: domain Description: TIGR003 76 Location: 9621-10008 bp Feature: domain Description: MTES_1575 Location: 10161-10446 bp Feature: domain Description: MTES_1575 Location: 10161-10446 bp Feature: domain Description: DUF3320 Location: 10686-10827 bp Feature: domain Description: DUF3 3 20 Location: 10686-10827 bp Feature: gene Location: 11274-13076 bp Feature: domain Description: rpsA Location: 11343-12960 bp Feature: domain Description: rpsA Location: 113 43 -12960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: QRKT01000043.1 Bacteroides ovatus strain AM14-40 AM14-40.Scaf43, whole genome shotgun sequence (18159 bp)
Overview 1 RT 1: 1697-7302 bp Neighborhood of RT #1 [1697, 7328] DUF4134 RVT_N RVT-GII GIIM DUF4133 Bac_Flav_CT_G Feature: gene Location: 1697-1912 bp Feature: domain Description: DUF4134 Location: 1715-1898 bp Feature: domain Description: DUF4 134 Location: 1715-1898 bp Feature: gene Location: 2037-2246 bp Feature: gene Location: 2528-4183 bp Feature: RT Description: RVT_N Location: 2585-2822 bp Feature: RT Description: RVT_N Location: 2585-2822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2873-3521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2873-3521 bp Feature: domain Description: GIIM Note: maturase Location: 3578-3809 bp Feature: domain Description: GIIM Note: maturase Location: 3578-3809 bp Feature: gene Location: 4456-4818 bp Feature: domain Description: DUF4133 Location: 4501-4768 bp Feature: domain Description: DUF4 133 Location: 4 501-4 768 bp Feature: gene Location: 4815-7328 bp Feature: domain Description: Bac_Flav_CT_G Location: 4818-7302 bp Feature: domain Description: Bac_Flav_CT_G Location: 4 818-7302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783)

Seq: QRKT01000008.1 Bacteroides ovatus strain AM14-40 AM14-40.Scaf8, whole genome shotgun sequence (250085 bp)
Overview 1 RT 1: 77629-81160 bp Neighborhood of RT #1 [77629, 81160] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 77629-78438 bp Feature: domain Description: DUF1566 Location: 78160-78409 bp Feature: domain Description: DUF15 66 Location: 78160-78409 bp Feature: gene Location: 78585-78992 bp Feature: domain Description: Avd_like Location: 78618-78927 bp Feature: domain Description: Avd_like Location: 78618-78927 bp Feature: gene Location: 79007-80428 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79382-80084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79382-80084 bp Feature: gene Location: 80391-80669 bp Feature: gene Location: 80867-81160 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs