myRT

myRT report for GCA_003472145.1_ASM347214v1

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Seq: QRKX01000011.1 Bacteroides ovatus strain AM14-26 AM14-26.Scaf11, whole genome shotgun sequence (245193 bp)
Overview 1 RT 1: 116997-119206 bp 2 RT 2: 152805-157514 bp Neighborhood of RT #1 [116997, 119463] RVT-GII HTH_28 HTH_23 COG4584 Neighborhood of RT #2 [152805, 157528] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 116997-117359 bp Feature: gene Location: 117363-117572 bp Feature: gene Location: 117602-117799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117605-117797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7605-1 1 7797 bp Feature: gene Location: 117920-118195 bp Feature: domain Description: HTH_28 Location: 117944-118091 bp Feature: domain Description: HTH_28 Location: 1 1 7944-1 1 8091 bp Feature: gene Location: 118357-119463 bp Feature: domain Description: HTH_23 Location: 118381-118504 bp Feature: domain Description: HTH_23 Location: 1 1 8381 -1 1 8504 bp Feature: domain Description: COG4584 Location: 118618-119206 bp Feature: domain Description: COG4584 Location: 1 1 861 8-1 1 9206 bp Feature: gene Location: 152805-154634 bp Feature: domain Description: Bac_Flav_CT_G Location: 152808-154620 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 52808-1 54620 bp Feature: gene Location: 154662-154835 bp Feature: gene Location: 155160-156992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155445-156267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 55445-1 56267 bp Feature: domain Description: Intron_maturas2 Location: 156342-156648 bp Feature: domain Description: Intron_maturas2 Location: 1 56342-1 56648 bp Feature: domain Description: HNHc Note: nucleases Location: 156798-156963 bp Feature: domain Description: HNHc Note: nucleases Location: 1 56798-1 56963 bp Feature: gene Location: 157070-157348 bp Feature: domain Description: Bac_Flav_CT_G Location: 157088-157346 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 57088-1 57346 bp Feature: gene Location: 157355-157528 bp Feature: domain Description: Bac_Flav_CT_G Location: 157358-157514 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 57358-1 5751 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), HTH_23 (pfam13384), COG4584 (Transposase ), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRKX01000027.1 Bacteroides ovatus strain AM14-26 AM14-26.Scaf27, whole genome shotgun sequence (78003 bp)
Overview 1 RT 1: 690-12966 bp Neighborhood of RT #1 [690, 13082] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 690-1514 bp Feature: domain Description: PDDEXK_2 Location: 711-1389 bp Feature: domain Description: PDDEXK_2 Location: 711-1389 bp Feature: gene Location: 1681-3888 bp Feature: gene Location: 4094-5224 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4415-4958 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4415-4958 bp Feature: gene Location: 5226-11183 bp Feature: domain Description: DUF4011 Location: 6456-6969 bp Feature: domain Description: DUF4011 Location: 6456-6969 bp Feature: domain Description: DEXXQc_SF1 Location: 7308-8274 bp Feature: domain Description: DEXXQc_SF1 Location: 7308-82 74 bp Feature: domain Description: DEXXQc_SF1 Location: 8736-9495 bp Feature: domain Description: DEXXQc_SF1 Location: 8736-9495 bp Feature: domain Description: TIGR00376 Location: 9627-10014 bp Feature: domain Description: TIGR00376 Location: 962 7-10014 bp Feature: domain Description: MTES_1575 Location: 10167-10452 bp Feature: domain Description: MTES_1575 Location: 10167-10452 bp Feature: domain Description: DUF3320 Location: 10692-10833 bp Feature: domain Description: DUF332 0 Location: 10692 -10833 bp Feature: gene Location: 11280-13082 bp Feature: domain Description: rpsA Location: 11349-12966 bp Feature: domain Description: rpsA Location: 11349-12 966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), PDDEXK_2 (pfam12784)

Seq: QRKX01000003.1 Bacteroides ovatus strain AM14-26 AM14-26.Scaf3, whole genome shotgun sequence (404535 bp)
Overview 1 RT 1: 35272-46649 bp 2 RT 2: 263089-266257 bp Neighborhood of RT #1 [35272, 46649] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Neighborhood of RT #2 [263089, 266289] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 35272-36417 bp Feature: domain Description: Arm-DNA-bind_5 Location: 35296-35542 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3 5296-3 5542 bp Feature: domain Description: Phage_int_SAM_5 Location: 35581-35866 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 5581-3 5866 bp Feature: domain Description: INTN1_C_like Location: 35905-36379 bp Feature: domain Description: INTN1_C_like Location: 3 5905-3 63 79 bp Feature: gene Location: 36469-36963 bp Feature: gene Location: 36965-38320 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 37241-37832 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 7241-3 783 2 bp Feature: gene Location: 38694-45482 bp Feature: domain Description: Laminin_G_3 Location: 41130-41511 bp Feature: domain Description: Laminin_G_3 Location: 4113 0-41511 bp Feature: domain Description: CotH Location: 41775-42819 bp Feature: domain Description: CotH Location: 41775-42819 bp Feature: domain Description: LRR_AMN1 Location: 43236-43698 bp Feature: domain Description: LRR_AMN1 Location: 43 23 6-43 698 bp Feature: gene Location: 45492-46649 bp Feature: gene Location: 263089-263334 bp Feature: gene Location: 263318-263824 bp Feature: gene Location: 263892-265382 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 264285-264882 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 264285-264882 bp Feature: gene Location: 265629-265940 bp Feature: domain Description: HTH_XRE Location: 265743-265896 bp Feature: domain Description: HTH_XRE Location: 265743 -265896 bp Feature: gene Location: 265945-266289 bp Feature: domain Description: Gp49 Location: 265999-266257 bp Feature: domain Description: Gp49 Location: 265999-266257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QRKX01000065.1 Bacteroides ovatus strain AM14-26 AM14-26.Scaf65, whole genome shotgun sequence (2443 bp)
Overview 1 RT 1: 158-2441 bp Neighborhood of RT #1 [158, 2441] RVT_N RVT-GII GIIM Feature: gene Location: 158-367 bp Feature: gene Location: 649-2304 bp Feature: RT Description: RVT_N Location: 706-943 bp Feature: RT Description: RVT_N Location: 706-94 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994 -164 2 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1930 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1930 bp Feature: gene Location: 2307-2441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRKX01000009.1 Bacteroides ovatus strain AM14-26 AM14-26.Scaf9, whole genome shotgun sequence (250097 bp)
Overview 1 RT 1: 77635-81166 bp Neighborhood of RT #1 [77635, 81166] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 77635-78444 bp Feature: domain Description: DUF1566 Location: 78166-78415 bp Feature: domain Description: DUF15 66 Location: 78166-78415 bp Feature: gene Location: 78591-78998 bp Feature: domain Description: Avd_like Location: 78624-78933 bp Feature: domain Description: Avd_like Location: 78624-78933 bp Feature: gene Location: 79013-80434 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79388-80090 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79388-80090 bp Feature: gene Location: 80397-80675 bp Feature: gene Location: 80873-81166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs