myRT

myRT report for GCA_003472185.1_ASM347218v1

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Seq: QRKZ01000012.1 Parabacteroides merdae strain AM14-15 AM14-15.Scaf12, whole genome shotgun sequence (131906 bp)
Overview 1 RT 1: 54134-58247 bp Neighborhood of RT #1 [54134, 58258] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 54134-54358 bp Feature: domain Description: DUF4141 Location: 54146-54299 bp Feature: domain Description: DUF41 41 Location: 541 46-54299 bp Feature: gene Location: 54398-54559 bp Feature: gene Location: 54879-56714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55173-55995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551 73-55995 bp Feature: domain Description: Intron_maturas2 Location: 56154-56523 bp Feature: domain Description: Intron_maturas2 Location: 561 54-56523 bp Feature: domain Description: HNHc Note: nucleases Location: 56547-56688 bp Feature: domain Description: HNHc Note: nucleases Location: 56547-56688 bp Feature: gene Location: 56707-57243 bp Feature: gene Location: 57257-58258 bp Feature: domain Description: Bac_Flav_CT_J Location: 57284-58247 bp Feature: domain Description: Bac_Flav_CT_J Location: 57284-58247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QRKZ01000035.1 Parabacteroides merdae strain AM14-15 AM14-15.Scaf35, whole genome shotgun sequence (47963 bp)
Overview 1 RT 1: 4572-10766 bp Neighborhood of RT #1 [4572, 11227] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 4572-4904 bp Feature: domain Description: DUF4133 Location: 4590-4857 bp Feature: domain Description: DUF4133 Location: 4590-4857 bp Feature: gene Location: 4901-7297 bp Feature: domain Description: Bac_Flav_CT_G Location: 4904-7286 bp Feature: domain Description: Bac_Flav_CT_G Location: 4904-72 86 bp Feature: gene Location: 7866-9689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8130-8952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8130-8952 bp Feature: domain Description: Intron_maturas2 Location: 9126-9369 bp Feature: domain Description: Intron_maturas2 Location: 912 6-9369 bp Feature: domain Description: HNHc Note: nucleases Location: 9480-9651 bp Feature: domain Description: HNHc Note: nucleases Location: 9480-9651 bp Feature: gene Location: 9936-10556 bp Feature: gene Location: 10598-11227 bp Feature: domain Description: DUF4141 Location: 10610-10766 bp Feature: domain Description: DUF4141 Location: 10610-10766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRKZ01000047.1 Parabacteroides merdae strain AM14-15 AM14-15.Scaf47, whole genome shotgun sequence (23551 bp)
Overview 1 RT 1: 10885-15476 bp Neighborhood of RT #1 [10885, 15490] DUF1738 MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 10885-11253 bp Feature: gene Location: 11312-12928 bp Feature: domain Description: DUF1738 Location: 11438-11714 bp Feature: domain Description: DUF173 8 Location: 1143 8-11714 bp Feature: domain Description: MPTase-PolyVal Location: 11876-12188 bp Feature: domain Description: MPTase-PolyVal Location: 11876-12188 bp Feature: gene Location: 12921-14726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13185-14007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 185-14007 bp Feature: domain Description: Intron_maturas2 Location: 14184-14406 bp Feature: domain Description: Intron_maturas2 Location: 14184-14406 bp Feature: gene Location: 14999-15232 bp Feature: gene Location: 15272-15490 bp Feature: domain Description: DUF1738 Location: 15326-15476 bp Feature: domain Description: DUF173 8 Location: 153 26-15476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1738 (pfam08401), MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRKZ01000056.1 Parabacteroides merdae strain AM14-15 AM14-15.Scaf56, whole genome shotgun sequence (18710 bp)
Overview 1 RT 1: 9528-16367 bp Neighborhood of RT #1 [9528, 16984] sigma70-ECF RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 9528-10052 bp Feature: domain Description: sigma70-ECF Location: 9564-10011 bp Feature: domain Description: sigma70-ECF Location: 9564 -10011 bp Feature: gene Location: 10505-11638 bp Feature: gene Location: 11592-13259 bp Feature: RT Description: RVT_N Location: 11646-11889 bp Feature: RT Description: RVT_N Location: 1164 6-11889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11934-12582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11934 -12582 bp Feature: domain Description: GIIM Note: maturase Location: 12636-12867 bp Feature: domain Description: GIIM Note: maturase Location: 12636-12867 bp Feature: gene Location: 13241-13555 bp Feature: gene Location: 13916-16984 bp Feature: domain Description: COG4646 Location: 14624-16367 bp Feature: domain Description: COG4 64 6 Location: 14 624 -16367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4646 (Adenine-specific DNA methylase, N12 class ), sigma70-ECF (TIGR02937)

Seq: QRKZ01000065.1 Parabacteroides merdae strain AM14-15 AM14-15.Scaf65, whole genome shotgun sequence (13556 bp)
Overview 1 RT 1: 4677-9614 bp Neighborhood of RT #1 [4677, 9880] YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 4677-5600 bp Feature: domain Description: YWFCY Location: 4683-4860 bp Feature: domain Description: YWFCY Location: 4683-4860 bp Feature: gene Location: 5760-5897 bp Feature: gene Location: 6237-7889 bp Feature: RT Description: RVT_N Location: 6291-6534 bp Feature: RT Description: RVT_N Location: 6291-65 34 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6579-7227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65 79-7227 bp Feature: domain Description: GIIM Note: maturase Location: 7281-7512 bp Feature: domain Description: GIIM Note: maturase Location: 7281-75 12 bp Feature: gene Location: 7894-9120 bp Feature: domain Description: TraG-D_C Location: 8476-8809 bp Feature: domain Description: TraG-D_C Location: 8476-8809 bp Feature: gene Location: 9338-9880 bp Feature: domain Description: DUF4326 Location: 9359-9614 bp Feature: domain Description: DUF4326 Location: 935 9-9614 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QRKZ01000072.1 Parabacteroides merdae strain AM14-15 AM14-15.Scaf72, whole genome shotgun sequence (10282 bp)
Overview 1 RT 1: 5792-10256 bp Neighborhood of RT #1 [5792, 10279] DUF4838 F5_F8_type_C INTN1_C_like RVT-GII Intron_maturas2 INTN1_C_like Feature: gene Location: 5792-7087 bp Feature: domain Description: DUF4838 Location: 5795-6236 bp Feature: domain Description: DUF4838 Location: 5795-6 236 bp Feature: domain Description: F5_F8_type_C Location: 6680-7046 bp Feature: domain Description: F5_F8_type_C Location: 6 6 80-7046 bp Feature: gene Location: 7251-7583 bp Feature: domain Description: INTN1_C_like Location: 7359-7536 bp Feature: domain Description: INTN1_C_like Location: 7359-7536 bp Feature: gene Location: 7591-9408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7855-8677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7855-86 77 bp Feature: domain Description: Intron_maturas2 Location: 8752-9058 bp Feature: domain Description: Intron_maturas2 Location: 8752-9058 bp Feature: gene Location: 9414-9554 bp Feature: gene Location: 9950-10279 bp Feature: domain Description: INTN1_C_like Location: 9968-10256 bp Feature: domain Description: INTN1_C_like Location: 996 8-10256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4838 (pfam16126), F5_F8_type_C (pfam00754), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348)