myRT

myRT report for GCA_003472195.1_ASM347219v1

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Seq: QRLH01000018.1 Bacteroides fragilis strain AM13-18 AM13-18.Scaf18, whole genome shotgun sequence (86092 bp)
Overview 1 RT 1: 5577-7593 bp Neighborhood of RT #1 [5577, 7593] RVT-GII HTH_28 Feature: gene Location: 5577-5939 bp Feature: gene Location: 5943-6152 bp Feature: gene Location: 6182-6379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6185-6377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 85-6377 bp Feature: gene Location: 6500-6790 bp Feature: domain Description: HTH_28 Location: 6524-6671 bp Feature: domain Description: HTH_28 Location: 6524-6671 bp Feature: gene Location: 7219-7593 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QRLH01000003.1 Bacteroides fragilis strain AM13-18 AM13-18.Scaf3, whole genome shotgun sequence (566394 bp)
Overview 1 RT 1: 520103-524195 bp Neighborhood of RT #1 [520103, 524224] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 520103-520330 bp Feature: domain Description: DUF4141 Location: 520115-520271 bp Feature: domain Description: DUF4141 Location: 52 0115-52 02 71 bp Feature: gene Location: 520370-520531 bp Feature: gene Location: 520851-522686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521145-521967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 1145-52 1967 bp Feature: domain Description: matK Location: 522144-522357 bp Feature: domain Description: matK Location: 52 2 144-52 2 357 bp Feature: domain Description: HNHc Note: nucleases Location: 522516-522660 bp Feature: domain Description: HNHc Note: nucleases Location: 52 2 516-52 2 660 bp Feature: gene Location: 522679-523215 bp Feature: gene Location: 523220-524224 bp Feature: domain Description: Bac_Flav_CT_J Location: 523226-524195 bp Feature: domain Description: Bac_Flav_CT_J Location: 52 32 2 6-52 4195 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QRLH01000008.1 Bacteroides fragilis strain AM13-18 AM13-18.Scaf8, whole genome shotgun sequence (187765 bp)
Overview 1 RT 1: 105487-114445 bp Neighborhood of RT #1 [105487, 114453] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 105487-107676 bp Feature: domain Description: GlnA3 Location: 105562-107674 bp Feature: domain Description: GlnA3 Location: 105562-107674 bp Feature: gene Location: 107916-110135 bp Feature: gene Location: 110342-111454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 110657-111206 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 110657-111206 bp Feature: gene Location: 111596-113389 bp Feature: domain Description: rpsA Location: 111674-113282 bp Feature: domain Description: rpsA Location: 111674-113 282 bp Feature: gene Location: 113539-114453 bp Feature: domain Description: RNase_Z Location: 113554-114445 bp Feature: domain Description: RNase_Z Location: 113 554-114445 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)