myRT

myRT report for GCA_003472445.1_ASM347244v1

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Seq: QRLY01000001.1 Bacteroides eggerthii strain AM10-54 AM10-54.Scaf1, whole genome shotgun sequence (362165 bp)
Overview 1 RT 1: 318835-321309 bp Neighborhood of RT #1 [318835, 321309] RVT_N RVT-GII GIIM Feature: gene Location: 318835-318981 bp Feature: gene Location: 318988-319218 bp Feature: gene Location: 319304-320806 bp Feature: domain Description: RVT_N Location: 319370-319613 bp Feature: domain Description: RVT_N Location: 31 9370-31 961 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 319658-320300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 9658-320300 bp Feature: domain Description: GIIM Note: maturase Location: 320357-320588 bp Feature: domain Description: GIIM Note: maturase Location: 320357-320588 bp Feature: gene Location: 320631-320993 bp Feature: gene Location: 321142-321309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRLY01000011.1 Bacteroides eggerthii strain AM10-54 AM10-54.Scaf11, whole genome shotgun sequence (166814 bp)
Overview 1 RT 1: 61832-65938 bp Neighborhood of RT #1 [61832, 65961] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 61832-62059 bp Feature: domain Description: DUF4141 Location: 61847-62000 bp Feature: domain Description: DUF4141 Location: 61847-62 000 bp Feature: gene Location: 62099-62260 bp Feature: gene Location: 62580-64415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62874-63696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 874-63696 bp Feature: domain Description: matK Location: 63873-64086 bp Feature: domain Description: matK Location: 63873-64086 bp Feature: domain Description: HNHc Note: nucleases Location: 64248-64389 bp Feature: domain Description: HNHc Note: nucleases Location: 642 48-64389 bp Feature: gene Location: 64408-64944 bp Feature: gene Location: 64948-65961 bp Feature: domain Description: Bac_Flav_CT_J Location: 64969-65938 bp Feature: domain Description: Bac_Flav_CT_J Location: 64969-65938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QRLY01000012.1 Bacteroides eggerthii strain AM10-54 AM10-54.Scaf12, whole genome shotgun sequence (164592 bp)
Overview 1 RT 1: 93322-96468 bp Neighborhood of RT #1 [93322, 96468] HU_rel RVT-DGRs Avd_like Feature: gene Location: 93322-93462 bp Feature: gene Location: 93642-94139 bp Feature: domain Description: HU_rel Location: 93696-94005 bp Feature: domain Description: HU_rel Location: 93 696-94005 bp Feature: gene Location: 94327-95586 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94522-95251 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 94522-95251 bp Feature: gene Location: 95561-95920 bp Feature: domain Description: Avd_like Location: 95588-95894 bp Feature: domain Description: Avd_like Location: 95588-95894 bp Feature: gene Location: 95941-96468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU_rel (TIGR01201), RVT-DGRs, Avd_like (cd16376)

Seq: QRLY01000006.1 Bacteroides eggerthii strain AM10-54 AM10-54.Scaf6, whole genome shotgun sequence (250648 bp)
Overview 1 RT 1: 76566-80529 bp Neighborhood of RT #1 [76566, 80529] MobC Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 76566-76931 bp Feature: domain Description: MobC Location: 76794-76923 bp Feature: domain Description: MobC Location: 76794 -76923 bp Feature: gene Location: 77108-78019 bp Feature: domain Description: Toprim_2 Location: 77660-77939 bp Feature: domain Description: Toprim_2 Location: 77660-77939 bp Feature: gene Location: 77991-79799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78255-79077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78255-79077 bp Feature: domain Description: Intron_maturas2 Location: 79146-79455 bp Feature: domain Description: Intron_maturas2 Location: 7914 6-794 55 bp Feature: gene Location: 80088-80231 bp Feature: gene Location: 80347-80529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobC (pfam05713), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRLY01000009.1 Bacteroides eggerthii strain AM10-54 AM10-54.Scaf9, whole genome shotgun sequence (202937 bp)
Overview 1 RT 1: 13834-22473 bp Neighborhood of RT #1 [13834, 23042] RVT-UG8 RVT-UG3 INTN1_C_like Feature: gene Location: 13834-14028 bp Feature: gene Location: 14354-14557 bp Feature: gene Location: 15813-17732 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16320-16755 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 16320-1675 5 bp Feature: gene Location: 17729-19027 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18089-18560 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 18089-185 60 bp Feature: gene Location: 20541-20684 bp Feature: gene Location: 21183-23042 bp Feature: domain Description: INTN1_C_like Location: 21939-22473 bp Feature: domain Description: INTN1_C_like Location: 21939-22473 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3, INTN1_C_like (cd01185)