myRT

myRT report for GCA_003472565.1_ASM347256v1

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Seq: QRME01000001.1 Bacteroides sp. AM10-21B AM10-21B.Scaf1, whole genome shotgun sequence (522010 bp)
Overview 1 RT 1: 22903-32827 bp Neighborhood of RT #1 [22903, 32874] COG3943 ComA-like_MBL-fold ComA-like_MBL-fold RVT-UG9 DNA_pol_A DNA_pol_A PRK15098 F5_F8_type_C Feature: gene Location: 22903-23901 bp Feature: domain Description: COG3943 Location: 22921-23884 bp Feature: domain Description: COG3943 Location: 22921 -23884 bp Feature: gene Location: 24139-25131 bp Feature: domain Description: ComA-like_MBL-fold Location: 24190-24454 bp Feature: domain Description: ComA-like_MBL-fold Location: 241 90-24454 bp Feature: domain Description: ComA-like_MBL-fold Location: 24703-24871 bp Feature: domain Description: ComA-like_MBL-fold Location: 24703-24871 bp Feature: gene Location: 25106-27487 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 26024-26639 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 26024-26639 bp Feature: gene Location: 27484-28923 bp Feature: domain Description: DNA_pol_A Location: 28081-28537 bp Feature: domain Description: DNA_pol_A Location: 28081 -28537 bp Feature: domain Description: DNA_pol_A Location: 28675-28822 bp Feature: domain Description: DNA_pol_A Location: 28675-28822 bp Feature: gene Location: 30031-32874 bp Feature: domain Description: PRK15098 Location: 30208-32449 bp Feature: domain Description: PRK1 5098 Location: 30208-32449 bp Feature: domain Description: F5_F8_type_C Location: 32530-32827 bp Feature: domain Description: F5_F8_type_C Location: 32530-32827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), ComA-like_MBL-fold (cd07731), RVT-UG9, DNA_pol_A (pfam00476), PRK15098 (beta-glucosidase BglX), F5_F8_type_C (pfam00754)

Seq: QRME01000003.1 Bacteroides sp. AM10-21B AM10-21B.Scaf3, whole genome shotgun sequence (450190 bp)
Overview 1 RT 1: 26532-30579 bp 2 RT 2: 368865-372301 bp 3 RT 3: 394445-401682 bp Neighborhood of RT #1 [26532, 30584] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #2 [368865, 372306] DUF3873 RVT-AbiP2 DUF3872 TraO Neighborhood of RT #3 [394445, 401705] YWFCY RVT_N RVT-GII GIIM VirD4 RVT-GII Intron_maturas2 HNHc HTH_XRE Feature: gene Location: 26532-26957 bp Feature: domain Description: Bac_Flav_CT_N Location: 26535-26937 bp Feature: domain Description: Bac_Flav_CT_N Location: 2 6535-2 6937 bp Feature: gene Location: 27128-27463 bp Feature: gene Location: 27498-29309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27762-28584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7762 -2 8584 bp Feature: domain Description: Intron_maturas2 Location: 28653-28962 bp Feature: domain Description: Intron_maturas2 Location: 2 8653-2 8962 bp Feature: gene Location: 29299-30006 bp Feature: domain Description: Bac_Flav_CT_N Location: 29425-29986 bp Feature: domain Description: Bac_Flav_CT_N Location: 2 942 5-2 9986 bp Feature: gene Location: 30009-30584 bp Feature: domain Description: TraO Location: 30084-30579 bp Feature: domain Description: TraO Location: 30084-30579 bp Feature: gene Location: 368865-369083 bp Feature: domain Description: DUF3873 Location: 368874-369069 bp Feature: domain Description: DUF3873 Location: 368874-369069 bp Feature: gene Location: 369099-369581 bp Feature: gene Location: 369713-371221 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 370145-370601 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 370145-370601 bp Feature: gene Location: 371271-371711 bp Feature: domain Description: DUF3872 Location: 371301-371694 bp Feature: domain Description: DUF3872 Location: 371301-371694 bp Feature: gene Location: 371725-372306 bp Feature: domain Description: TraO Location: 371803-372301 bp Feature: domain Description: TraO Location: 371803-372 301 bp Feature: gene Location: 394445-395167 bp Feature: domain Description: YWFCY Location: 394451-394628 bp Feature: domain Description: YWFCY Location: 394451-39462 8 bp Feature: gene Location: 395378-395554 bp Feature: gene Location: 395774-397456 bp Feature: domain Description: RVT_N Location: 395846-396086 bp Feature: domain Description: RVT_N Location: 395846-396086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396134-396788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 396134-396788 bp Feature: domain Description: GIIM Note: maturase Location: 396842-397073 bp Feature: domain Description: GIIM Note: maturase Location: 396842 -397073 bp Feature: gene Location: 397459-398394 bp Feature: domain Description: VirD4 Location: 398098-398377 bp Feature: domain Description: VirD4 Location: 398098-398377 bp Feature: gene Location: 398953-400764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399217-400039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3992 17-400039 bp Feature: domain Description: Intron_maturas2 Location: 400165-400411 bp Feature: domain Description: Intron_maturas2 Location: 400165-400411 bp Feature: domain Description: HNHc Note: nucleases Location: 400567-400738 bp Feature: domain Description: HNHc Note: nucleases Location: 400567-400738 bp Feature: gene Location: 400751-401383 bp Feature: gene Location: 401502-401705 bp Feature: domain Description: HTH_XRE Location: 401514-401682 bp Feature: domain Description: HTH_XRE Location: 401514-401682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626), DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388)
VirD4 (COG3505), HNHc (smart00507), HTH_XRE (smart00530)

Seq: QRME01000006.1 Bacteroides sp. AM10-21B AM10-21B.Scaf6, whole genome shotgun sequence (335577 bp)
Overview 1 RT 1: 220814-228713 bp Neighborhood of RT #1 [220814, 228730] COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C AtoC Feature: gene Location: 220814-221527 bp Feature: domain Description: COG4646 Location: 220889-221516 bp Feature: domain Description: COG4646 Location: 220889-221516 bp Feature: gene Location: 221705-221974 bp Feature: gene Location: 222080-223882 bp Feature: domain Description: matK Location: 222149-222236 bp Feature: domain Description: matK Location: 222149-22223 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222344-223166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2223 44-223 166 bp Feature: domain Description: Intron_maturas2 Location: 223316-223550 bp Feature: domain Description: Intron_maturas2 Location: 223 3 16-223 550 bp Feature: gene Location: 223869-226634 bp Feature: domain Description: COG4646 Location: 223983-225123 bp Feature: domain Description: COG4646 Location: 223 983 -225123 bp Feature: domain Description: Helicase_C Location: 225336-225534 bp Feature: domain Description: Helicase_C Location: 2253 3 6-22553 4 bp Feature: gene Location: 227408-228730 bp Feature: domain Description: AtoC Location: 227414-228713 bp Feature: domain Description: AtoC Location: 227414-228713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), AtoC (COG2204)