myRT

myRT report for GCA_003472665.1_ASM347266v1

Download annotations/find similar RTs

Seq: QRML01000010.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf10, whole genome shotgun sequence (120073 bp)
Overview 1 RT 1: 87586-91989 bp Neighborhood of RT #1 [87586, 91989] SusD cNMP_binding RVT-GII GIIM Feature: gene Location: 87586-89202 bp Feature: domain Description: SusD Location: 87850-89071 bp Feature: domain Description: SusD Location: 87850-89071 bp Feature: gene Location: 89212-89814 bp Feature: domain Description: cNMP_binding Location: 89320-89575 bp Feature: domain Description: cNMP_binding Location: 89320-89575 bp Feature: gene Location: 89960-91342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90302-90920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90302-90920 bp Feature: domain Description: GIIM Note: maturase Location: 90971-91202 bp Feature: domain Description: GIIM Note: maturase Location: 90971 -91 202 bp Feature: gene Location: 91424-91579 bp Feature: gene Location: 91843-91989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), cNMP_binding (pfam00027), RVT-GII, GIIM (pfam08388)

Seq: QRML01000014.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf14, whole genome shotgun sequence (93574 bp)
Overview 1 RT 1: 45048-55321 bp Neighborhood of RT #1 [45048, 55321] pfam08757 RVT-DGRs Feature: gene Location: 45048-52676 bp Feature: domain Description: pfam08757 Location: 49479-49965 bp Feature: domain Description: pfam08757 Location: 49479-49965 bp Feature: gene Location: 52761-53054 bp Feature: gene Location: 53084-54370 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53276-53873 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 532 76-53873 bp Feature: gene Location: 54372-54851 bp Feature: gene Location: 55016-55321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam08757 (CotH;CotH kinase protein), RVT-DGRs

Seq: QRML01000024.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf24, whole genome shotgun sequence (61498 bp)
Overview 1 RT 1: 44193-50107 bp Neighborhood of RT #1 [44193, 50145] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Feature: gene Location: 44193-44807 bp Feature: gene Location: 44813-45310 bp Feature: domain Description: Bac_Flav_CT_G Location: 44852-45275 bp Feature: domain Description: Bac_Flav_CT_G Location: 44852-45275 bp Feature: gene Location: 45367-47181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45631-46453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4563 1-46453 bp Feature: domain Description: Intron_maturas2 Location: 46528-46846 bp Feature: domain Description: Intron_maturas2 Location: 46528-46846 bp Feature: domain Description: HNHc Note: nucleases Location: 47002-47152 bp Feature: domain Description: HNHc Note: nucleases Location: 47002-47152 bp Feature: gene Location: 47729-49825 bp Feature: domain Description: Bac_Flav_CT_G Location: 47732-49811 bp Feature: domain Description: Bac_Flav_CT_G Location: 4773 2-49811 bp Feature: gene Location: 49822-50145 bp Feature: domain Description: DUF4133 Location: 49837-50107 bp Feature: domain Description: DUF413 3 Location: 4983 7-50107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: QRML01000035.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf35, whole genome shotgun sequence (42840 bp)
Overview 1 RT 1: 18311-22458 bp Neighborhood of RT #1 [18311, 22458] TipAS COG2369 LPD3 RVT-DGRs Feature: gene Location: 18311-19522 bp Feature: domain Description: TipAS Location: 18335-18638 bp Feature: domain Description: TipAS Location: 18335-18638 bp Feature: domain Description: COG2369 Location: 18758-18944 bp Feature: domain Description: COG2369 Location: 18758-1894 4 bp Feature: domain Description: LPD3 Location: 19163-19445 bp Feature: domain Description: LPD3 Location: 19163-194 4 5 bp Feature: gene Location: 19620-19853 bp Feature: gene Location: 20229-21530 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20442-21039 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 204 4 2-21039 bp Feature: gene Location: 21527-22012 bp Feature: gene Location: 22216-22458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), RVT-DGRs

Seq: QRML01000004.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf4, whole genome shotgun sequence (143896 bp)
Overview 1 RT 1: 22109-27064 bp Neighborhood of RT #1 [22109, 27064] Mob_Pre CENP-F_leu_zip Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 22109-23377 bp Feature: domain Description: Mob_Pre Location: 22175-22721 bp Feature: domain Description: Mob_Pre Location: 22175 -22721 bp Feature: domain Description: CENP-F_leu_zip Location: 22907-23030 bp Feature: domain Description: CENP-F_leu_zip Location: 22907-23030 bp Feature: gene Location: 23616-24572 bp Feature: domain Description: Toprim_2 Location: 24186-24465 bp Feature: domain Description: Toprim_2 Location: 24186-24465 bp Feature: gene Location: 24526-26334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24790-25612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24790-25 612 bp Feature: domain Description: Intron_maturas2 Location: 25681-25990 bp Feature: domain Description: Intron_maturas2 Location: 25 681-25 990 bp Feature: gene Location: 26623-26766 bp Feature: gene Location: 26882-27064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mob_Pre (pfam01076), CENP-F_leu_zip (pfam10473), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRML01000040.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf40, whole genome shotgun sequence (33820 bp)
Overview 1 RT 1: 29886-32886 bp Neighborhood of RT #1 [29886, 32886] RVT-GII GIIM Feature: gene Location: 29886-30293 bp Feature: gene Location: 30339-30581 bp Feature: gene Location: 30864-32159 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31059-31674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31059-316 74 bp Feature: domain Description: GIIM Note: maturase Location: 31746-31959 bp Feature: domain Description: GIIM Note: maturase Location: 31746 -31959 bp Feature: gene Location: 32392-32556 bp Feature: gene Location: 32689-32886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRML01000006.1 Bacteroides plebeius strain AM09-36 AM09-36.Scaf6, whole genome shotgun sequence (139731 bp)
Overview 1 RT 1: 78132-85217 bp Neighborhood of RT #1 [78132, 85217] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 78132-79166 bp Feature: domain Description: dnaG Location: 78219-79122 bp Feature: domain Description: dnaG Location: 7 8219-7 9122 bp Feature: gene Location: 79173-79913 bp Feature: gene Location: 79915-83352 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 80425-80890 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 80425-80890 bp Feature: gene Location: 83790-84995 bp Feature: domain Description: Arm-DNA-bind_5 Location: 83823-84039 bp Feature: domain Description: Arm-DNA-bind_5 Location: 83823-84039 bp Feature: domain Description: Phage_int_SAM_5 Location: 84177-84411 bp Feature: domain Description: Phage_int_SAM_5 Location: 8417 7 -84411 bp Feature: domain Description: INTN1_C_like Location: 84477-84981 bp Feature: domain Description: INTN1_C_like Location: 8447 7 -84981 bp Feature: gene Location: 85017-85217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)