myRT

myRT report for GCA_003472675.1_ASM347267v1

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Seq: QRMM01000001.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf1, whole genome shotgun sequence (1095959 bp)
Overview 1 RT 1: 371989-383371 bp 2 RT 2: 928293-931795 bp Neighborhood of RT #1 [371989, 383371] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Neighborhood of RT #2 [928293, 931824] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 371989-373134 bp Feature: domain Description: Arm-DNA-bind_5 Location: 372013-372259 bp Feature: domain Description: Arm-DNA-bind_5 Location: 37201 3-372259 bp Feature: domain Description: Phage_int_SAM_5 Location: 372298-372583 bp Feature: domain Description: Phage_int_SAM_5 Location: 372298-372583 bp Feature: domain Description: INTN1_C_like Location: 372622-373096 bp Feature: domain Description: INTN1 _C_like Location: 372622-373096 bp Feature: gene Location: 373184-373678 bp Feature: gene Location: 373680-375035 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 373956-374547 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 373956-374547 bp Feature: gene Location: 375407-382195 bp Feature: domain Description: Laminin_G_3 Location: 377843-378224 bp Feature: domain Description: Laminin_G_3 Location: 377843-378224 bp Feature: domain Description: pfam08757 Location: 379019-379343 bp Feature: domain Description: pfam08757 Location: 37901 9-379343 bp Feature: domain Description: LRR_AMN1 Location: 379949-380420 bp Feature: domain Description: LRR_AMN1 Location: 379949-380420 bp Feature: gene Location: 382205-383371 bp Feature: gene Location: 928293-928586 bp Feature: gene Location: 928784-929062 bp Feature: gene Location: 929025-930446 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 929400-930102 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 929400-9301 02 bp Feature: gene Location: 930461-930868 bp Feature: domain Description: Avd_like Location: 930494-930803 bp Feature: domain Description: Avd_like Location: 930494-930803 bp Feature: gene Location: 931015-931824 bp Feature: domain Description: DUF1566 Location: 931546-931795 bp Feature: domain Description: DUF1 566 Location: 931 546-931 795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QRMM01000002.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf2, whole genome shotgun sequence (456476 bp)
Overview 1 RT 1: 91513-95159 bp Neighborhood of RT #1 [91513, 95159] RVT-DGRs Feature: gene Location: 91513-91893 bp Feature: gene Location: 91890-92318 bp Feature: gene Location: 92281-93468 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92614-93241 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 92 614-932 41 bp Feature: gene Location: 93589-93744 bp Feature: gene Location: 93798-95159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRMM01000003.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf3, whole genome shotgun sequence (384161 bp)
Overview 1 RT 1: 104204-106815 bp 2 RT 2: 320831-326153 bp 3 RT 3: 371232-376620 bp Neighborhood of RT #1 [104204, 106815] RVT-GII GIIM RVT-GII Neighborhood of RT #2 [320831, 330274] RVT-DGRs Laminin_G_3 Laminin_G_3 Neighborhood of RT #3 [371232, 376631] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 104204-104410 bp Feature: gene Location: 104546-104803 bp Feature: gene Location: 104903-105592 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104924-105323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104924-1053 23 bp Feature: domain Description: GIIM Note: maturase Location: 105338-105569 bp Feature: domain Description: GIIM Note: maturase Location: 1053 3 8-105569 bp Feature: gene Location: 105595-106083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105931-106069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10593 1-106069 bp Feature: gene Location: 106373-106618 bp Feature: gene Location: 106687-106815 bp Feature: gene Location: 320831-321073 bp Feature: gene Location: 321253-321738 bp Feature: gene Location: 321735-323039 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 321948-322542 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 21948-3 22542 bp Feature: gene Location: 323141-323359 bp Feature: gene Location: 323555-330274 bp Feature: domain Description: Laminin_G_3 Location: 324998-325076 bp Feature: domain Description: Laminin_G_3 Location: 3 24998-3 25076 bp Feature: domain Description: Laminin_G_3 Location: 325727-326153 bp Feature: domain Description: Laminin_G_3 Location: 3 25727-3 26153 bp Feature: gene Location: 371232-371603 bp Feature: domain Description: DUF3876 Location: 371313-371586 bp Feature: domain Description: DUF3 876 Location: 3 713 13 -3 71586 bp Feature: gene Location: 371618-371746 bp Feature: gene Location: 371841-373664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372105-372927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 72105-3 72927 bp Feature: domain Description: Intron_maturas2 Location: 373107-373344 bp Feature: domain Description: Intron_maturas2 Location: 3 73 107-3 73 3 44 bp Feature: domain Description: HNHc Note: nucleases Location: 373455-373626 bp Feature: domain Description: HNHc Note: nucleases Location: 3 73 455-3 73 626 bp Feature: gene Location: 373922-374098 bp Feature: gene Location: 374232-376631 bp Feature: domain Description: Bac_Flav_CT_G Location: 374235-376620 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 7423 5-3 76620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT-DGRs, Laminin_G_3 (pfam13385), DUF3876 (pfam12992), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: QRMM01000004.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf4, whole genome shotgun sequence (348031 bp)
Overview 1 RT 1: 2-5689 bp 2 RT 2: 77963-89920 bp Neighborhood of RT #1 [2, 5689] RVT-GII Intron_maturas2 Toprim_2 Neighborhood of RT #2 [77963, 89920] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 2-142 bp Feature: gene Location: 635-817 bp Feature: gene Location: 1366-3174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1630-2452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1630-24 52 bp Feature: domain Description: Intron_maturas2 Location: 2521-2830 bp Feature: domain Description: Intron_maturas2 Location: 2521-2830 bp Feature: gene Location: 3146-4075 bp Feature: domain Description: Toprim_2 Location: 3698-3986 bp Feature: domain Description: Toprim_2 Location: 3698-3986 bp Feature: gene Location: 4286-5689 bp Feature: gene Location: 77963-79762 bp Feature: domain Description: rpsA Location: 78032-79646 bp Feature: domain Description: rpsA Location: 78032-7964 6 bp Feature: gene Location: 79931-85759 bp Feature: domain Description: DUF4011 Location: 81086-81599 bp Feature: domain Description: DUF4 011 Location: 81086-81599 bp Feature: domain Description: DEXXQc_SF1 Location: 81938-82538 bp Feature: domain Description: DEXXQc_SF1 Location: 81938-82538 bp Feature: domain Description: DEXXQc_SF1 Location: 83375-84125 bp Feature: domain Description: DEXXQc_SF1 Location: 83375-84 125 bp Feature: domain Description: SF1_C_Upf1 Location: 84134-84647 bp Feature: domain Description: SF1_C_Upf1 Location: 84 134 -84 64 7 bp Feature: domain Description: MTES_1575 Location: 84797-85085 bp Feature: domain Description: MTES_1575 Location: 84 797-85085 bp Feature: domain Description: DUF3320 Location: 85265-85409 bp Feature: domain Description: DUF3320 Location: 85265-854 09 bp Feature: gene Location: 85793-86926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86117-86669 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86117-86669 bp Feature: gene Location: 87132-89318 bp Feature: gene Location: 89720-89920 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: QRMM01000041.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf41, whole genome shotgun sequence (24632 bp)
Overview 1 RT 1: 11039-15127 bp Neighborhood of RT #1 [11039, 15186] Bac_Flav_CT_J RVT-GII matK HNHc DUF4141 Feature: gene Location: 11039-12043 bp Feature: domain Description: Bac_Flav_CT_J Location: 11045-12014 bp Feature: domain Description: Bac_Flav_CT_J Location: 11045 -12014 bp Feature: gene Location: 12047-12583 bp Feature: gene Location: 12576-14411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12870-13692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12870-13692 bp Feature: domain Description: matK Location: 13863-14076 bp Feature: domain Description: matK Location: 13863-14076 bp Feature: domain Description: HNHc Note: nucleases Location: 14244-14385 bp Feature: domain Description: HNHc Note: nucleases Location: 14244-14385 bp Feature: gene Location: 14731-14892 bp Feature: gene Location: 14932-15186 bp Feature: domain Description: DUF4141 Location: 14971-15127 bp Feature: domain Description: DUF4141 Location: 14971-15 127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, matK (CHL00002), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QRMM01000047.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf47, whole genome shotgun sequence (13025 bp)
Overview 1 RT 1: 3-7250 bp Neighborhood of RT #1 [3, 7633] TetM_like RVT_N RVT-GII GIIM COG4646 Feature: gene Location: 3-323 bp Feature: domain Description: TetM_like Location: 18-324 bp Feature: domain Description: TetM_like Location: 18-324 bp Feature: gene Location: 983-2050 bp Feature: gene Location: 2289-3962 bp Feature: RT Description: RVT_N Location: 2343-2586 bp Feature: RT Description: RVT_N Location: 2343-2586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2631-3279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26 31-3279 bp Feature: domain Description: GIIM Note: maturase Location: 3333-3564 bp Feature: domain Description: GIIM Note: maturase Location: 3333-356 4 bp Feature: gene Location: 3944-4258 bp Feature: gene Location: 4619-7633 bp Feature: domain Description: COG4646 Location: 5180-7250 bp Feature: domain Description: COG46 46 Location: 5180-7250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TetM_like (cd04168), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QRMM01000054.1 Bacteroides thetaiotaomicron strain AM09-21 AM09-21.Scaf54, whole genome shotgun sequence (2425 bp)
Overview 1 RT 1: 652-1927 bp Neighborhood of RT #1 [652, 2304] RVT_N RVT-GII GIIM Feature: gene Location: 652-2304 bp Feature: RT Description: RVT_N Location: 706-949 bp Feature: RT Description: RVT_N Location: 7 06-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994-1642 bp Feature: domain Description: GIIM Note: maturase Location: 1696-1927 bp Feature: domain Description: GIIM Note: maturase Location: 1696-1927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)