myRT

myRT report for GCA_003472875.1_ASM347287v1

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Seq: QRNA01000013.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf13, whole genome shotgun sequence (70450 bp)
Overview 1 RT 1: 16300-19649 bp Neighborhood of RT #1 [16300, 19649] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 16300-16599 bp Feature: gene Location: 16587-17525 bp Feature: domain Description: TraG-D_C Location: 17169-17502 bp Feature: domain Description: TraG-D_C Location: 1 71 69-1 7502 bp Feature: gene Location: 17530-19182 bp Feature: domain Description: RVT_N Location: 17584-17827 bp Feature: domain Description: RVT_N Location: 1 7584-1 7827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17872-18520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7872-1 8520 bp Feature: domain Description: GIIM Note: maturase Location: 18574-18805 bp Feature: domain Description: GIIM Note: maturase Location: 1 8574-1 8805 bp Feature: gene Location: 19348-19482 bp Feature: gene Location: 19500-19649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRNA01000015.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf15, whole genome shotgun sequence (63293 bp)
Overview 1 RT 1: 39179-41723 bp Neighborhood of RT #1 [39179, 41723] RVT-UG27 RVT-UG27 Feature: gene Location: 39179-39457 bp Feature: gene Location: 39487-39753 bp Feature: gene Location: 39803-40507 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 39806-40073 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 39806-40073 bp Feature: gene Location: 40564-41064 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 40756-41062 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 40756-41062 bp Feature: gene Location: 41081-41356 bp Feature: gene Location: 41364-41723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRNA01000192.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf192, whole genome shotgun sequence (2713 bp)
Overview 1 RT 1: 1-2147 bp Neighborhood of RT #1 [1, 2491] RVT-GII Intron_maturas2 Feature: gene Location: 1-150 bp Feature: gene Location: 683-2491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 947-1769 bp Feature: domain Description: Intron_maturas2 Location: 1892-2147 bp Feature: domain Description: Intron_maturas2 Location: 1892-2147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRNA01000198.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf198, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 563-2027 bp Neighborhood of RT #1 [563, 2371] RVT-GII Intron_maturas2 Feature: gene Location: 563-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-164 9 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRNA01000002.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf2, whole genome shotgun sequence (122070 bp)
Overview 1 RT 1: 67558-70653 bp Neighborhood of RT #1 [67558, 74759] RVT-DGRs Laminin_G_3 Feature: gene Location: 67558-67800 bp Feature: gene Location: 67981-68466 bp Feature: gene Location: 68463-69632 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 68541-69135 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 685 41-69135 bp Feature: gene Location: 68820-70148 bp Feature: gene Location: 70296-74759 bp Feature: domain Description: Laminin_G_3 Location: 70404-70653 bp Feature: domain Description: Laminin_G_3 Location: 70404-7065 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QRNA01000023.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf23, whole genome shotgun sequence (51082 bp)
Overview 1 RT 1: 13118-14661 bp Neighborhood of RT #1 [13118, 14661] RVT-GII HTH_28 Feature: gene Location: 13118-13480 bp Feature: gene Location: 13484-13693 bp Feature: gene Location: 13723-13920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13726-13918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13726 -13918 bp Feature: gene Location: 14059-14331 bp Feature: domain Description: HTH_28 Location: 14065-14209 bp Feature: domain Description: HTH_28 Location: 1406 5-14209 bp Feature: gene Location: 14509-14661 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QRNA01000006.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf6, whole genome shotgun sequence (97447 bp)
Overview 1 RT 1: 19040-24361 bp Neighborhood of RT #1 [19040, 26481] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs pfam08757 Feature: gene Location: 19040-20185 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19064-19310 bp Feature: domain Description: Arm-DNA-bind_5 Location: 19064-19310 bp Feature: domain Description: Phage_int_SAM_5 Location: 19349-19634 bp Feature: domain Description: Phage_int_SAM_5 Location: 19349-19634 bp Feature: domain Description: INTN1_C_like Location: 19673-20147 bp Feature: domain Description: INTN1_C_like Location: 1967 3-20147 bp Feature: gene Location: 20236-20730 bp Feature: gene Location: 20732-22207 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21128-21719 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21128-217 19 bp Feature: gene Location: 22460-23116 bp Feature: gene Location: 23191-26481 bp Feature: domain Description: pfam08757 Location: 24037-24361 bp Feature: domain Description: pfam087 57 Location: 24037 -24361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, pfam08757 (CotH;CotH kinase protein)

Seq: QRNA01000086.1 Bacteroides caccae strain AF46-5GN AF46-5GN.Scaf86, whole genome shotgun sequence (21954 bp)
Overview 1 RT 1: 10170-15532 bp Neighborhood of RT #1 [10170, 15546] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 10170-10802 bp Feature: domain Description: DUF4141 Location: 10194-10341 bp Feature: domain Description: DUF4141 Location: 10194-10341 bp Feature: gene Location: 10823-11281 bp Feature: domain Description: Bac_Flav_CT_G Location: 10841-11267 bp Feature: domain Description: Bac_Flav_CT_G Location: 108 41-11267 bp Feature: gene Location: 11359-13170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11623-12445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11623-12445 bp Feature: domain Description: Intron_maturas2 Location: 12520-12835 bp Feature: domain Description: Intron_maturas2 Location: 12520-128 35 bp Feature: domain Description: HNHc Note: nucleases Location: 12991-13141 bp Feature: domain Description: HNHc Note: nucleases Location: 12991-13141 bp Feature: gene Location: 13516-13689 bp Feature: gene Location: 13717-15546 bp Feature: domain Description: Bac_Flav_CT_G Location: 13720-15532 bp Feature: domain Description: Bac_Flav_CT_G Location: 13720-15532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)