myRT

myRT report for GCA_003472925.1_ASM347292v1

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Seq: QRNR01000012.1 Bacteroides ovatus strain AF42-23 AF42-23.Scaf12, whole genome shotgun sequence (167026 bp)
Overview 1 RT 1: 125908-129063 bp Neighborhood of RT #1 [125908, 129063] SSB_OBF RVT_N RVT-GII GIIM Feature: gene Location: 125908-126309 bp Feature: domain Description: SSB_OBF Location: 125932-126196 bp Feature: domain Description: SSB_OBF Location: 1 25932-1 261 96 bp Feature: gene Location: 126328-126531 bp Feature: gene Location: 127092-128594 bp Feature: RT Description: RVT_N Location: 127158-127401 bp Feature: RT Description: RVT_N Location: 1 271 58-1 27401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127446-128088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 27446-1 28088 bp Feature: domain Description: GIIM Note: maturase Location: 128145-128376 bp Feature: domain Description: GIIM Note: maturase Location: 1 281 45-1 28376 bp Feature: gene Location: 128680-128910 bp Feature: gene Location: 128917-129063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRNR01000016.1 Bacteroides ovatus strain AF42-23 AF42-23.Scaf16, whole genome shotgun sequence (134204 bp)
Overview 1 RT 1: 91552-98889 bp Neighborhood of RT #1 [91552, 98927] CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 91552-95508 bp Feature: domain Description: CotH Location: 92386-92845 bp Feature: domain Description: CotH Location: 92 386-92 845 bp Feature: domain Description: LRR_AMN1 Location: 93262-93727 bp Feature: domain Description: LRR_AMN1 Location: 932 62 -9372 7 bp Feature: gene Location: 95570-95737 bp Feature: gene Location: 95882-97237 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96158-96749 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 96158-96749 bp Feature: gene Location: 97239-97733 bp Feature: gene Location: 97782-98927 bp Feature: domain Description: Arm-DNA-bind_5 Location: 97806-98052 bp Feature: domain Description: Arm-DNA-bind_5 Location: 97806-98052 bp Feature: domain Description: Phage_int_SAM_5 Location: 98091-98376 bp Feature: domain Description: Phage_int_SAM_5 Location: 98091-98376 bp Feature: domain Description: INTN1_C_like Location: 98415-98889 bp Feature: domain Description: INTN1_C_like Location: 98415-98889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QRNR01000027.1 Bacteroides ovatus strain AF42-23 AF42-23.Scaf27, whole genome shotgun sequence (77478 bp)
Overview 1 RT 1: 112-10585 bp Neighborhood of RT #1 [112, 10602] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 Feature: gene Location: 112-936 bp Feature: domain Description: PDDEXK_2 Location: 133-811 bp Feature: domain Description: PDDEXK_2 Location: 13 3 -811 bp Feature: gene Location: 1103-3310 bp Feature: gene Location: 3514-4644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3835-4378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 83 5-43 78 bp Feature: gene Location: 4646-5014 bp Feature: gene Location: 4999-10602 bp Feature: domain Description: DUF4011 Location: 6229-6742 bp Feature: domain Description: DUF4011 Location: 6229-6742 bp Feature: domain Description: DEXXQc_SF1 Location: 7081-8023 bp Feature: domain Description: DEXXQc_SF1 Location: 7081-8023 bp Feature: domain Description: DEXXQc_SF1 Location: 8509-9268 bp Feature: domain Description: DEXXQc_SF1 Location: 8509-9268 bp Feature: domain Description: TIGR00376 Location: 9400-9787 bp Feature: domain Description: TIGR003 76 Location: 9400-9787 bp Feature: domain Description: MTES_1575 Location: 9940-10225 bp Feature: domain Description: MTES_1575 Location: 9940-10225 bp Feature: domain Description: DUF3320 Location: 10465-10585 bp Feature: domain Description: DUF3 3 20 Location: 10465-10585 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QRNR01000034.1 Bacteroides ovatus strain AF42-23 AF42-23.Scaf34, whole genome shotgun sequence (68849 bp)
Overview 1 RT 1: 21086-27970 bp Neighborhood of RT #1 [21086, 27970] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 21086-22633 bp Feature: domain Description: AAA_25 Location: 21701-22163 bp Feature: domain Description: AAA_25 Location: 21701-22163 bp Feature: gene Location: 22845-23027 bp Feature: gene Location: 23576-25384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23840-24662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2384 0-24 662 bp Feature: domain Description: Intron_maturas2 Location: 24731-25040 bp Feature: domain Description: Intron_maturas2 Location: 24 731-2504 0 bp Feature: gene Location: 25356-26285 bp Feature: domain Description: Toprim_2 Location: 25908-26196 bp Feature: domain Description: Toprim_2 Location: 25908-26196 bp Feature: gene Location: 26567-27970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QRNR01000036.1 Bacteroides ovatus strain AF42-23 AF42-23.Scaf36, whole genome shotgun sequence (66979 bp)
Overview 1 RT 1: 47867-53056 bp Neighborhood of RT #1 [47867, 53070] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 47867-48181 bp Feature: domain Description: DUF3876 Location: 47921-48170 bp Feature: domain Description: DUF3876 Location: 47921-48170 bp Feature: gene Location: 48196-49890 bp Feature: domain Description: Bac_Flav_CT_G Location: 48316-49882 bp Feature: domain Description: Bac_Flav_CT_G Location: 48316-49882 bp Feature: gene Location: 49887-51548 bp Feature: RT Description: RVT_N Location: 49941-50184 bp Feature: RT Description: RVT_N Location: 49941-5 0184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50229-50877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 0229-5 0877 bp Feature: domain Description: GIIM Note: maturase Location: 50931-51162 bp Feature: domain Description: GIIM Note: maturase Location: 5 0931-5 1162 bp Feature: gene Location: 51630-52010 bp Feature: gene Location: 52132-53070 bp Feature: domain Description: Bac_Flav_CT_G Location: 52135-53056 bp Feature: domain Description: Bac_Flav_CT_G Location: 5 2135 -5 305 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRNR01000041.1 Bacteroides ovatus strain AF42-23 AF42-23.Scaf41, whole genome shotgun sequence (60336 bp)
Overview 1 RT 1: 5525-9956 bp Neighborhood of RT #1 [5525, 9994] Relaxase RVT-GII Intron_maturas2 HNHc RVT-GII Relaxase MobC Feature: gene Location: 5525-6244 bp Feature: gene Location: 6249-6851 bp Feature: domain Description: Relaxase Location: 6264-6648 bp Feature: domain Description: Relaxase Location: 6 26 4-6 6 48 bp Feature: gene Location: 6947-7867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6956-7148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 956 -7148 bp Feature: domain Description: Intron_maturas2 Location: 7223-7538 bp Feature: domain Description: Intron_maturas2 Location: 7223-7538 bp Feature: domain Description: HNHc Note: nucleases Location: 7694-7838 bp Feature: domain Description: HNHc Note: nucleases Location: 76 94-7838 bp Feature: gene Location: 7873-8751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8137-8635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8137-86 35 bp Feature: gene Location: 9304-9645 bp Feature: domain Description: Relaxase Location: 9331-9637 bp Feature: domain Description: Relaxase Location: 9331-96 37 bp Feature: gene Location: 9611-9994 bp Feature: domain Description: MobC Location: 9827-9956 bp Feature: domain Description: MobC Location: 9827-9956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MobC (pfam05713)