myRT

myRT report for GCA_003473045.1_ASM347304v1

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Seq: QRLD01000015.1 [Ruminococcus] gnavus strain AM13-39 AM13-39.Scaf15, whole genome shotgun sequence (79210 bp)
Overview 1 RT 1: 70072-78264 bp Neighborhood of RT #1 [70072, 78266] YhdJ RVT-GII CwlT_like CHAP Glyco_hydro_10 Feature: gene Location: 70072-70902 bp Feature: gene Location: 70912-71730 bp Feature: domain Description: YhdJ Location: 71002-71695 bp Feature: domain Description: YhdJ Location: 71 002-71 695 bp Feature: gene Location: 72477-74390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72795-73521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72795-73521 bp Feature: gene Location: 74544-76265 bp Feature: domain Description: CwlT_like Location: 75387-75819 bp Feature: domain Description: CwlT_like Location: 75387-7581 9 bp Feature: domain Description: CHAP Location: 75930-76188 bp Feature: domain Description: CHAP Location: 75930-761 88 bp Feature: gene Location: 77082-78266 bp Feature: domain Description: Glyco_hydro_10 Location: 77118-78264 bp Feature: domain Description: Glyco_hydro_1 0 Location: 771 1 8-78264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhdJ (COG0863), RVT-GII, CwlT_like, CHAP (pfam05257), Glyco_hydro_10 (pfam00331)

Seq: QRLD01000002.1 [Ruminococcus] gnavus strain AM13-39 AM13-39.Scaf2, whole genome shotgun sequence (341082 bp)
Overview 1 RT 1: 242600-246928 bp Neighborhood of RT #1 [242600, 247017] RVT-DGRs ABC_trans_CmpB Feature: gene Location: 242600-244279 bp Feature: gene Location: 244291-244434 bp Feature: gene Location: 244660-245916 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 244951-245542 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 44951-2 45542 bp Feature: gene Location: 245876-246574 bp Feature: gene Location: 246574-247017 bp Feature: domain Description: ABC_trans_CmpB Location: 246667-246928 bp Feature: domain Description: ABC_trans_CmpB Location: 2 46667-2 4692 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, ABC_trans_CmpB (pfam06541)

Seq: QRLD01000021.1 [Ruminococcus] gnavus strain AM13-39 AM13-39.Scaf21, whole genome shotgun sequence (56000 bp)
Overview 1 RT 1: 31797-36715 bp Neighborhood of RT #1 [31797, 36715] BaeS Trans_reg_C RVT-GII RVT-GII VirD4 Feature: gene Location: 31797-32954 bp Feature: domain Description: BaeS Location: 32031-32940 bp Feature: domain Description: BaeS Location: 3 203 1-3 2940 bp Feature: gene Location: 32951-33160 bp Feature: domain Description: Trans_reg_C Location: 32954-33140 bp Feature: domain Description: Trans_reg_C Location: 3 2954-3 3 140 bp Feature: gene Location: 33307-34179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33637-34102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 63 7-3 4102 bp Feature: gene Location: 34176-35213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34182-34380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4182-3 43 80 bp Feature: gene Location: 35429-36415 bp Feature: domain Description: VirD4 Location: 35495-36284 bp Feature: domain Description: VirD4 Location: 3 5495-3 6284 bp Feature: gene Location: 36521-36715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), Trans_reg_C (smart00862), RVT-GII, VirD4 (COG3505)

Seq: QRLD01000004.1 [Ruminococcus] gnavus strain AM13-39 AM13-39.Scaf4, whole genome shotgun sequence (188277 bp)
Overview 1 RT 1: 156736-161466 bp Neighborhood of RT #1 [156736, 161466] PHA00430 RVT-DGRs Feature: gene Location: 156736-159075 bp Feature: domain Description: PHA00430 Location: 157159-157702 bp Feature: domain Description: PHA004 30 Location: 157159-157702 bp Feature: gene Location: 159272-159421 bp Feature: gene Location: 159585-160856 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 159885-160545 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 159885-16054 5 bp Feature: gene Location: 161136-161282 bp Feature: gene Location: 161275-161466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00430 (tail fiber protein), RVT-DGRs

Seq: QRLD01000049.1 [Ruminococcus] gnavus strain AM13-39 AM13-39.Scaf49, whole genome shotgun sequence (1874 bp)
Overview 1 RT 1: 92-1873 bp Neighborhood of RT #1 [92, 1873] RVT-GII Feature: gene Location: 92-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: gene Location: 1501-1650 bp Feature: gene Location: 1727-1873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII