myRT

myRT report for GCA_003473265.1_ASM347326v1

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Seq: QRMN01000115.1 Bacteroides vulgatus strain AM09-18 AM09-18.Scaf115, whole genome shotgun sequence (7371 bp)
Overview 1 RT 1: 2199-7003 bp Neighborhood of RT #1 [2199, 7083] COG3378 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 2199-3404 bp Feature: domain Description: COG3378 Location: 2568-2877 bp Feature: domain Description: COG3378 Location: 2568-2877 bp Feature: gene Location: 3662-3844 bp Feature: gene Location: 4392-6200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4656-5478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4656-5478 bp Feature: domain Description: Intron_maturas2 Location: 5547-5856 bp Feature: domain Description: Intron_maturas2 Location: 5547-5856 bp Feature: gene Location: 6172-7083 bp Feature: domain Description: Toprim_2 Location: 6724-7003 bp Feature: domain Description: Toprim_2 Location: 6724-7003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3378 (Phage- or plasmid-associated DNA primase ), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QRMN01000142.1 Bacteroides vulgatus strain AM09-18 AM09-18.Scaf142, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 122-2418 bp Neighborhood of RT #1 [122, 2418] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 1856-2029 bp Feature: gene Location: 2221-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRMN01000038.1 Bacteroides vulgatus strain AM09-18 AM09-18.Scaf38, whole genome shotgun sequence (48704 bp)
Overview 1 RT 1: 36485-42071 bp Neighborhood of RT #1 [36485, 42160] RVT-UG3 RVT-UG8 Phage_int_SAM_5 INTN1_C_like Arm-DNA-bind_5 Feature: gene Location: 36485-36736 bp Feature: gene Location: 36772-36990 bp Feature: gene Location: 37255-38721 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 37744-38263 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 3 7744-3 8263 bp Feature: gene Location: 38718-40922 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 39312-39762 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3 93 12-3 9762 bp Feature: gene Location: 41262-41732 bp Feature: domain Description: Phage_int_SAM_5 Location: 41289-41382 bp Feature: domain Description: Phage_int_SAM_5 Location: 41289-413 82 bp Feature: domain Description: INTN1_C_like Location: 41442-41727 bp Feature: domain Description: INTN1_C_like Location: 41442-41727 bp Feature: gene Location: 41846-42160 bp Feature: domain Description: Arm-DNA-bind_5 Location: 41870-42071 bp Feature: domain Description: Arm-DNA-bind_5 Location: 41870-42071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG3, RVT-UG8, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293)

Seq: QRMN01000005.1 Bacteroides vulgatus strain AM09-18 AM09-18.Scaf5, whole genome shotgun sequence (154818 bp)
Overview 1 RT 1: 86882-91646 bp Neighborhood of RT #1 [86882, 91678] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 86882-87343 bp Feature: gene Location: 87392-88768 bp Feature: domain Description: MPTase-PolyVal Location: 87665-87971 bp Feature: domain Description: MPTase-PolyVal Location: 87665-87971 bp Feature: gene Location: 88770-90581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89034-89856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89034 -89856 bp Feature: domain Description: Intron_maturas2 Location: 89997-90237 bp Feature: domain Description: Intron_maturas2 Location: 89997-90237 bp Feature: gene Location: 90712-90969 bp Feature: gene Location: 91145-91678 bp Feature: domain Description: DUF1738 Location: 91196-91646 bp Feature: domain Description: DUF1738 Location: 91196-9164 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)