myRT

myRT report for GCA_003473325.1_ASM347332v1

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Seq: QRMT01000011.1 Ruminococcus sp. AM07-21 AM07-21.Scaf11, whole genome shotgun sequence (131815 bp)
Overview 1 RT 1: 101878-114306 bp Neighborhood of RT #1 [101878, 114320] DUF3848 DUF3849 COG4646 KOG1000 RVT-GII YtxK COG4646 Feature: gene Location: 101878-102696 bp Feature: domain Description: DUF3848 Location: 101896-102175 bp Feature: domain Description: DUF3848 Location: 1 01 896-1 021 75 bp Feature: domain Description: DUF3849 Location: 102211-102574 bp Feature: domain Description: DUF3849 Location: 1 0221 1 -1 02574 bp Feature: gene Location: 102698-104809 bp Feature: domain Description: COG4646 Location: 102791-103367 bp Feature: domain Description: COG4646 Location: 1 02791 -1 03367 bp Feature: domain Description: KOG1000 Location: 103805-104009 bp Feature: domain Description: KOG1 000 Location: 1 03805-1 04009 bp Feature: gene Location: 104902-106797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105196-105910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 051 96-1 0591 0 bp Feature: gene Location: 106945-107289 bp Feature: gene Location: 107538-114320 bp Feature: domain Description: YtxK Location: 111573-112227 bp Feature: domain Description: YtxK Location: 1 1 1 573-1 1 2227 bp Feature: domain Description: COG4646 Location: 112299-114306 bp Feature: domain Description: COG4646 Location: 1 1 2299-1 1 4306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3848 (pfam12959), DUF3849 (pfam12960), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, YtxK (COG0827)

Seq: QRMT01000052.1 Ruminococcus sp. AM07-21 AM07-21.Scaf52, whole genome shotgun sequence (10497 bp)
Overview 1 RT 1: 7553-9708 bp Neighborhood of RT #1 [7553, 10061] AAA_18 HxlR RVT-GII Feature: gene Location: 7553-8098 bp Feature: domain Description: AAA_18 Location: 7574-7952 bp Feature: domain Description: AAA_18 Location: 7574-7952 bp Feature: gene Location: 8178-8546 bp Feature: domain Description: HxlR Location: 8226-8541 bp Feature: domain Description: HxlR Location: 82 2 6-8541 bp Feature: gene Location: 8655-10061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9045-9708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9045-9708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_18 (pfam13238), HxlR (pfam01638), RVT-GII

Seq: QRMT01000063.1 Ruminococcus sp. AM07-21 AM07-21.Scaf63, whole genome shotgun sequence (4717 bp)
Overview 1 RT 1: 1-3536 bp Neighborhood of RT #1 [1, 3667] TIGR04076 RVT-GII GIIM YdiL Feature: gene Location: 1-324 bp Feature: domain Description: TIGR04076 Location: 79-244 bp Feature: domain Description: TIGR04076 Location: 79-244 bp Feature: gene Location: 597-770 bp Feature: gene Location: 821-2119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1076-1769 bp Feature: domain Description: GIIM Note: maturase Location: 1829-2048 bp Feature: domain Description: GIIM Note: maturase Location: 1829-2048 bp Feature: gene Location: 2296-2613 bp Feature: gene Location: 2642-3667 bp Feature: domain Description: YdiL Location: 2858-3536 bp Feature: domain Description: YdiL Location: 2858-3 53 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR04076 (TIGR04076 family protein), YdiL (COG1266), RVT-GII, GIIM (pfam08388)

Seq: QRMT01000080.1 Ruminococcus sp. AM07-21 AM07-21.Scaf80, whole genome shotgun sequence (1890 bp)
Overview 1 RT 1: 2-1647 bp Neighborhood of RT #1 [2, 1811] RVT-GII GIIM Feature: gene Location: 2-193 bp Feature: gene Location: 534-1811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 747-1362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 7-1362 bp Feature: domain Description: GIIM Note: maturase Location: 1428-1647 bp Feature: domain Description: GIIM Note: maturase Location: 14 28-164 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)