myRT

myRT report for GCA_003473465.1_ASM347346v1

Download annotations/find similar RTs

Seq: QRHW01000002.1 Dorea longicatena strain AM23-13 AM23-13.Scaf2, whole genome shotgun sequence (242605 bp)
Overview 1 RT 1: 29168-38239 bp Neighborhood of RT #1 [29168, 38868] IscR HDGYP RVT-GII HTH_30 SpaA CollagenBindB SpaA Feature: gene Location: 29168-30655 bp Feature: domain Description: IscR Location: 29198-29600 bp Feature: domain Description: IscR Location: 291 98-29600 bp Feature: domain Description: HDGYP Location: 29900-30644 bp Feature: domain Description: HDGYP Location: 29900-30644 bp Feature: gene Location: 30760-31074 bp Feature: gene Location: 31426-32115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31636-31813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 636-31 81 3 bp Feature: domain Description: HTH_30 Location: 31918-32074 bp Feature: domain Description: HTH_30 Location: 31 91 8-32074 bp Feature: gene Location: 32320-32730 bp Feature: gene Location: 32773-38868 bp Feature: domain Description: SpaA Location: 37198-37393 bp Feature: domain Description: SpaA Location: 371 98-37393 bp Feature: domain Description: CollagenBindB Location: 37567-37795 bp Feature: domain Description: CollagenBindB Location: 37567-37795 bp Feature: domain Description: SpaA Location: 37984-38239 bp Feature: domain Description: SpaA Location: 37984-38239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IscR (TIGR02010), HDGYP (COG2206), RVT-GII, HTH_30 (pfam13556), SpaA (pfam17802), CollagenBindB (cl15753)

Seq: QRHW01000023.1 Dorea longicatena strain AM23-13 AM23-13.Scaf23, whole genome shotgun sequence (47070 bp)
Overview 1 RT 1: 33584-38235 bp Neighborhood of RT #1 [33584, 38546] Couple_hipA PRK08154 RVT-UNC Cyt_C5_DNA_methylase TIR_2 Feature: gene Location: 33584-33730 bp Feature: domain Description: Couple_hipA Location: 33605-33722 bp Feature: domain Description: Couple_hipA Location: 33605-3372 2 bp Feature: gene Location: 33717-33995 bp Feature: domain Description: PRK08154 Location: 33741-33924 bp Feature: domain Description: PRK08154 Location: 33741-3392 4 bp Feature: gene Location: 34512-36227 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 35052-35475 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 35052 -35475 bp Feature: gene Location: 36510-36866 bp Feature: gene Location: 36885-38546 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 36915-37818 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 36915-37818 bp Feature: domain Description: TIR_2 Location: 37962-38235 bp Feature: domain Description: TIR_2 Location: 37962 -382 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), PRK08154 (anaerobic benzoate catabolism transcriptional regulator; Reviewed), RVT-AbiK/RVT-UG12/RVT-UG15/RVT-UG8(RVT-UNC), Cyt_C5_DNA_methylase (cl30459), TIR_2 (pfam13676)

Seq: QRHW01000008.1 Dorea longicatena strain AM23-13 AM23-13.Scaf8, whole genome shotgun sequence (124141 bp)
Overview 1 RT 1: 13301-16455 bp 2 RT 2: 18620-23136 bp Neighborhood of RT #1 [13301, 16466] RVT-GII lipoamide_DH sda_beta sda_alpha Neighborhood of RT #2 [18620, 23153] TVP38 RVT-GII MET17 PBP2_phosphate_like_1 Feature: gene Location: 13301-13510 bp Feature: gene Location: 13602-13739 bp Feature: gene Location: 13796-15442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13883-14516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 883 -14516 bp Feature: domain Description: lipoamide_DH Location: 14603-15410 bp Feature: domain Description: lipoamide_DH Location: 14603 -15410 bp Feature: gene Location: 15464-15826 bp Feature: domain Description: sda_beta Location: 15473-15809 bp Feature: domain Description: sda_beta Location: 15473 -15809 bp Feature: gene Location: 15864-16466 bp Feature: domain Description: sda_alpha Location: 15873-16455 bp Feature: domain Description: sda_alpha Location: 15873 -16455 bp Feature: gene Location: 18620-19306 bp Feature: domain Description: TVP38 Location: 18716-19301 bp Feature: domain Description: TVP3 8 Location: 18716-193 01 bp Feature: gene Location: 19570-19707 bp Feature: gene Location: 19795-20397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20146-20356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20146-203 56 bp Feature: gene Location: 20739-22052 bp Feature: domain Description: MET17 Location: 20778-22047 bp Feature: domain Description: MET17 Location: 20778-22047 bp Feature: gene Location: 22200-23153 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 22362-23136 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 223 62-23 13 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, lipoamide_DH (TIGR01350), sda_beta, sda_alpha, TVP38 (COG0398), MET17 (COG2873), PBP2_phosphate_like_1 (cd13653)