myRT

myRT report for GCA_003473495.1_ASM347349v1

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Seq: QUCI01000001.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf1, whole genome shotgun sequence (419215 bp)
Overview 1 RT 1: 416458-419197 bp Neighborhood of RT #1 [416458, 419197] RVT-GII Feature: gene Location: 416458-416676 bp Feature: gene Location: 416901-417080 bp Feature: gene Location: 417170-418465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417425-418115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 7425-41 81 1 5 bp Feature: gene Location: 418730-419197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUCI01000028.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf28, whole genome shotgun sequence (36739 bp)
Overview 1 RT 1: 21873-24626 bp Neighborhood of RT #1 [21873, 24655] GIIM RVT-GII NTP_transferase VanZ Feature: gene Location: 21873-22079 bp Feature: gene Location: 22162-22464 bp Feature: domain Description: GIIM Note: maturase Location: 22189-22369 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 189-2 2 369 bp Feature: gene Location: 22533-22940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22539-22719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 539-2 2 719 bp Feature: gene Location: 23132-24037 bp Feature: domain Description: NTP_transferase Location: 23153-23942 bp Feature: domain Description: NTP_transferase Location: 2 3153-2 3942 bp Feature: gene Location: 24041-24655 bp Feature: domain Description: VanZ Location: 24257-24626 bp Feature: domain Description: VanZ Location: 2 42 57-2 462 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, NTP_transferase (pfam00483), VanZ (pfam04892)

Seq: QUCI01000031.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf31, whole genome shotgun sequence (33234 bp)
Overview 1 RT 1: 29607-32858 bp Neighborhood of RT #1 [29607, 32858] CAPF_like_SDR_e DSBH RVT-GII GIIM Feature: gene Location: 29607-30644 bp Feature: domain Description: CAPF_like_SDR_e Location: 29652-30276 bp Feature: domain Description: CAPF_like_SDR_e Location: 29652-3 0276 bp Feature: domain Description: DSBH Location: 30369-30570 bp Feature: domain Description: DSBH Location: 3 03 69-3 0570 bp Feature: gene Location: 30607-30888 bp Feature: gene Location: 31222-32520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31477-32164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1477-3 2164 bp Feature: domain Description: GIIM Note: maturase Location: 32224-32449 bp Feature: domain Description: GIIM Note: maturase Location: 3 2224-3 2449 bp Feature: gene Location: 32529-32858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CAPF_like_SDR_e (cd05261), DSBH (LOAD_DSBH), RVT-GII, GIIM (pfam08388)

Seq: QUCI01000038.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf38, whole genome shotgun sequence (16082 bp)
Overview 1 RT 1: 12242-15407 bp Neighborhood of RT #1 [12242, 15934] TnpV RVT-GII GIIM Peptidase_S51 OAD_beta Feature: gene Location: 12242-12694 bp Feature: domain Description: TnpV Location: 12362-12686 bp Feature: domain Description: TnpV Location: 12362-12686 bp Feature: gene Location: 12986-13159 bp Feature: gene Location: 13162-14508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13465-14158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134 65-14 158 bp Feature: domain Description: GIIM Note: maturase Location: 14218-14437 bp Feature: domain Description: GIIM Note: maturase Location: 14 218-14 4 37 bp Feature: gene Location: 14619-15236 bp Feature: domain Description: Peptidase_S51 Location: 14928-15093 bp Feature: domain Description: Peptidase_S51 Location: 14 928-15093 bp Feature: gene Location: 15284-15934 bp Feature: domain Description: OAD_beta Location: 15299-15407 bp Feature: domain Description: OAD_beta Location: 15299-154 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpV (pfam14198), RVT-GII, GIIM (pfam08388), Peptidase_S51 (pfam03575), OAD_beta (pfam03977)

Seq: QUCI01000051.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf51, whole genome shotgun sequence (2512 bp)
Overview 1 RT 1: 571-2065 bp Neighborhood of RT #1 [571, 2403] RVT-GII Intron_maturas2 Feature: gene Location: 571-2403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 850-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 0-1684 bp Feature: domain Description: Intron_maturas2 Location: 1762-2065 bp Feature: domain Description: Intron_maturas2 Location: 1762-2065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QUCI01000007.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf7, whole genome shotgun sequence (175618 bp)
Overview 1 RT 1: 114664-118479 bp Neighborhood of RT #1 [114664, 118574] INT_RitB_C_like Phage_int_SAM_1 INT_RitA_C_like RVT-GII Cytidylate_kin2 Feature: gene Location: 114664-115647 bp Feature: domain Description: INT_RitB_C_like Location: 115000-115585 bp Feature: domain Description: INT_RitB_C_like Location: 115000-115585 bp Feature: gene Location: 115640-116875 bp Feature: domain Description: Phage_int_SAM_1 Location: 115994-116216 bp Feature: domain Description: Phage_int_SAM_1 Location: 115994-116 216 bp Feature: domain Description: INT_RitA_C_like Location: 116309-116849 bp Feature: domain Description: INT_RitA_C_like Location: 116 309-116 849 bp Feature: gene Location: 117048-117716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117339-117714 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117339-117714 bp Feature: gene Location: 117749-118258 bp Feature: gene Location: 118287-118574 bp Feature: domain Description: Cytidylate_kin2 Location: 118293-118479 bp Feature: domain Description: Cytidylate_kin2 Location: 118293-118479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), RVT-GII, Cytidylate_kin2 (pfam13189)

Seq: QUCI01000009.1 Ruminococcus sp. AM23-1LB AM23-1LB.Scaf9, whole genome shotgun sequence (164536 bp)
Overview 1 RT 1: 41939-44877 bp Neighborhood of RT #1 [41939, 44877] AbiH RVT-GII Feature: gene Location: 41939-42124 bp Feature: gene Location: 42145-43044 bp Feature: domain Description: AbiH Location: 42160-42961 bp Feature: domain Description: AbiH Location: 42160-42961 bp Feature: gene Location: 43362-43856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43521-43851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43521-43851 bp Feature: gene Location: 44047-44262 bp Feature: gene Location: 44659-44877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiH (pfam14253), RVT-GII