myRT

myRT report for GCA_003473565.1_ASM347356v1

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Seq: QUCO01000002.1 Clostridium sp. AM18-55 AM18-55.Scaf2, whole genome shotgun sequence (224363 bp)
Overview 1 RT 1: 57775-63439 bp Neighborhood of RT #1 [57775, 64434] RVT-Retrons KAP_NTPase Tmk Feature: gene Location: 57775-58584 bp Feature: gene Location: 58728-59309 bp Feature: gene Location: 59594-60628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59747-60308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 59747-60308 bp Feature: gene Location: 60799-61668 bp Feature: gene Location: 61807-64434 bp Feature: domain Description: KAP_NTPase Location: 62410-63196 bp Feature: domain Description: KAP_NTPase Location: 6241 0-631 96 bp Feature: domain Description: Tmk Location: 63280-63439 bp Feature: domain Description: Tmk Location: 63280-63439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, KAP_NTPase (pfam07693), Tmk (COG0125)

Seq: QUCO01000025.1 Clostridium sp. AM18-55 AM18-55.Scaf25, whole genome shotgun sequence (36680 bp)
Overview 1 RT 1: 5012-8626 bp Neighborhood of RT #1 [5012, 8628] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 5012-5500 bp Feature: domain Description: Phage_holin_4_1 Location: 5051-5411 bp Feature: domain Description: Phage_holin_4_1 Location: 5051-5411 bp Feature: gene Location: 5497-5676 bp Feature: gene Location: 5701-6762 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5938-6559 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5938-6559 bp Feature: gene Location: 7089-7445 bp Feature: domain Description: Avd_like Location: 7119-7425 bp Feature: domain Description: Avd_like Location: 7119-742 5 bp Feature: gene Location: 7486-8628 bp Feature: domain Description: PHA00653 Location: 7609-8626 bp Feature: domain Description: PHA00653 Location: 7609-862 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: QUCO01000007.1 Clostridium sp. AM18-55 AM18-55.Scaf7, whole genome shotgun sequence (123266 bp)
Overview 1 RT 1: 110336-114458 bp Neighborhood of RT #1 [110336, 114490] McrA PRK12459 RVT-GII DUF3221 Feature: gene Location: 110336-110695 bp Feature: domain Description: McrA Location: 110456-110678 bp Feature: domain Description: McrA Location: 110456-110678 bp Feature: gene Location: 110698-111747 bp Feature: domain Description: PRK12459 Location: 110704-111745 bp Feature: domain Description: PRK12459 Location: 110704-111745 bp Feature: gene Location: 112028-113323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112283-112973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112283 -112973 bp Feature: gene Location: 113376-113621 bp Feature: gene Location: 113822-114490 bp Feature: domain Description: DUF3221 Location: 114350-114458 bp Feature: domain Description: DUF3 221 Location: 1143 50-114458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT McrA (COG4058), PRK12459 (S-adenosylmethionine synthetase; Provisional), RVT-GII, DUF3221 (pfam11518)