myRT

myRT report for GCA_003473625.1_ASM347362v1

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Seq: QUCF01000002.1 Lachnospiraceae bacterium AM23-7LB AM23-7LB.Scaf2, whole genome shotgun sequence (151786 bp)
Overview 1 RT 1: 142300-150173 bp Neighborhood of RT #1 [142300, 150181] RVT-UNC pyru_phos_dikin RVT-GII GIIM Peptidase_C39_2 RpoN Feature: gene Location: 142300-142983 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 142309-142975 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 1 42309-1 42975 bp Feature: gene Location: 143150-145774 bp Feature: domain Description: pyru_phos_dikin Location: 143162-145733 bp Feature: domain Description: pyru_phos_dikin Location: 1 431 62-1 45733 bp Feature: gene Location: 146146-147558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146497-147118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46497-1 471 1 8 bp Feature: domain Description: GIIM Note: maturase Location: 147172-147397 bp Feature: domain Description: GIIM Note: maturase Location: 1 471 72-1 47397 bp Feature: gene Location: 148017-148766 bp Feature: domain Description: Peptidase_C39_2 Location: 148170-148524 bp Feature: domain Description: Peptidase_C39_2 Location: 1 481 70-1 48524 bp Feature: gene Location: 148886-150181 bp Feature: domain Description: RpoN Location: 148889-150173 bp Feature: domain Description: RpoN Location: 1 48889-1 501 73 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjjG/YfnB(RVT-UNC), pyru_phos_dikin (TIGR01828), RVT-GII, GIIM (pfam08388), Peptidase_C39_2 (pfam13529), RpoN (COG1508)

Seq: QUCF01000021.1 Lachnospiraceae bacterium AM23-7LB AM23-7LB.Scaf21, whole genome shotgun sequence (55858 bp)
Overview 1 RT 1: 5856-14361 bp Neighborhood of RT #1 [5856, 14378] AE_Prim_S_like RVT-UG10 MutT_pyrophosphohydrolase COG3886 SSL2 DUF3427 Feature: gene Location: 5856-6314 bp Feature: gene Location: 7874-8344 bp Feature: gene Location: 8420-10903 bp Feature: domain Description: AE_Prim_S_like Location: 8588-8948 bp Feature: domain Description: AE_Prim_S_like Location: 8588-8948 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 9734-10352 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 9734-10352 bp Feature: gene Location: 10975-11388 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 11005-11365 bp Feature: domain Description: MutT_pyrophosphohydrolase Location: 11005-11365 bp Feature: gene Location: 11403-14378 bp Feature: domain Description: COG3886 Location: 11436-11955 bp Feature: domain Description: COG3886 Location: 11436-11955 bp Feature: domain Description: SSL2 Location: 12006-13416 bp Feature: domain Description: SSL2 Location: 12 006-13416 bp Feature: domain Description: DUF3427 Location: 13524-14361 bp Feature: domain Description: DUF342 7 Location: 1352 4-14361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S_like (cl01287), RVT-UG10, MutT_pyrophosphohydrolase (cd03425), COG3886 (HKD family nuclease ), SSL2 (COG1061), DUF3427 (pfam11907)

Seq: QUCF01000038.1 Lachnospiraceae bacterium AM23-7LB AM23-7LB.Scaf38, whole genome shotgun sequence (17913 bp)
Overview 1 RT 1: 6994-10490 bp Neighborhood of RT #1 [6994, 10490] Rep_trans HTH_XRE Rol_Rep_N RVT-GII GIIM Feature: gene Location: 6994-7725 bp Feature: domain Description: Rep_trans Location: 7021-7636 bp Feature: domain Description: Rep_trans Location: 7021-763 6 bp Feature: gene Location: 7750-8205 bp Feature: domain Description: HTH_XRE Location: 7795-7948 bp Feature: domain Description: HTH_XRE Location: 7795-7948 bp Feature: domain Description: Rol_Rep_N Location: 7969-8200 bp Feature: domain Description: Rol_Rep_N Location: 7969-8200 bp Feature: gene Location: 8859-9653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9051-9636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9051-963 6 bp Feature: gene Location: 9678-10127 bp Feature: domain Description: GIIM Note: maturase Location: 9732-9948 bp Feature: domain Description: GIIM Note: maturase Location: 973 2-9948 bp Feature: gene Location: 10284-10490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rep_trans (pfam02486), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), RVT-GII, GIIM (pfam08388)