myRT

myRT report for GCA_003473725.1_ASM347372v1

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Seq: QUCN01000010.1 Lachnospiraceae bacterium AM21-21 AM21-21.Scaf10, whole genome shotgun sequence (82373 bp)
Overview 1 RT 1: 35884-40307 bp Neighborhood of RT #1 [35884, 40307] SpoIIID RVT-GII GIIM AAA_21 AAA_21 Feature: gene Location: 35884-36339 bp Feature: domain Description: SpoIIID Location: 36094-36334 bp Feature: domain Description: SpoIIID Location: 36094-36334 bp Feature: gene Location: 36610-36789 bp Feature: gene Location: 36786-38198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37137-37758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 37-37758 bp Feature: domain Description: GIIM Note: maturase Location: 37812-38037 bp Feature: domain Description: GIIM Note: maturase Location: 3781 2-38037 bp Feature: gene Location: 38386-39771 bp Feature: domain Description: AAA_21 Location: 38518-38869 bp Feature: domain Description: AAA_21 Location: 3851 8-38869 bp Feature: domain Description: AAA_21 Location: 39376-39571 bp Feature: domain Description: AAA_21 Location: 39376-39571 bp Feature: gene Location: 39771-40307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoIIID (pfam12116), RVT-GII, GIIM (pfam08388), AAA_21 (pfam13304)

Seq: QUCN01000013.1 Lachnospiraceae bacterium AM21-21 AM21-21.Scaf13, whole genome shotgun sequence (77687 bp)
Overview 1 RT 1: 37867-44338 bp Neighborhood of RT #1 [37867, 44376] STKc_PknB_like RVT-UG5 nitrilase NTP_transferase VanZ Feature: gene Location: 37867-38004 bp Feature: gene Location: 38042-39550 bp Feature: domain Description: STKc_PknB_like Location: 38135-38882 bp Feature: domain Description: STKc_PknB_like Location: 38135-38882 bp Feature: gene Location: 39624-42593 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 40128-40590 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4012 8-40590 bp Feature: domain Description: nitrilase Location: 41856-42537 bp Feature: domain Description: nitrilase Location: 41856-42 537 bp Feature: gene Location: 42697-43614 bp Feature: domain Description: NTP_transferase Location: 42715-43528 bp Feature: domain Description: NTP_transferase Location: 42 715-4352 8 bp Feature: gene Location: 43744-44376 bp Feature: domain Description: VanZ Location: 43951-44338 bp Feature: domain Description: VanZ Location: 43951-44338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), RVT-UG5, nitrilase (cl11424), NTP_transferase (pfam00483), VanZ (pfam04892)

Seq: QUCN01000032.1 Lachnospiraceae bacterium AM21-21 AM21-21.Scaf32, whole genome shotgun sequence (35398 bp)
Overview 1 RT 1: 31651-35330 bp Neighborhood of RT #1 [31651, 35395] RVT-Retrons Trypsin_2 Feature: gene Location: 31651-31815 bp Feature: gene Location: 31965-33449 bp Feature: gene Location: 33782-35395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 33923-34517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 3 923 -3 4517 bp Feature: domain Description: Trypsin_2 Location: 34919-35330 bp Feature: domain Description: Trypsin_2 Location: 3 4919-3 53 3 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365)

Seq: QUCN01000055.1 Lachnospiraceae bacterium AM21-21 AM21-21.Scaf55, whole genome shotgun sequence (6507 bp)
Overview 1 RT 1: 516-3556 bp Neighborhood of RT #1 [516, 3556] RVT-UG2 DUF4160 Feature: gene Location: 516-767 bp Feature: gene Location: 764-1075 bp Feature: gene Location: 1439-2737 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1625-2438 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1625-24 38 bp Feature: gene Location: 3025-3303 bp Feature: domain Description: DUF4160 Location: 3055-3268 bp Feature: domain Description: DUF4 160 Location: 3055-3268 bp Feature: gene Location: 3287-3556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2, DUF4160 (pfam13711)

Seq: QUCN01000071.1 Lachnospiraceae bacterium AM21-21 AM21-21.Scaf71, whole genome shotgun sequence (2790 bp)
Overview 1 RT 1: 1-1822 bp Neighborhood of RT #1 [1, 2649] AAA_10 RVT-GII Feature: gene Location: 1-126 bp Feature: domain Description: AAA_10 Location: 4-91 bp Feature: domain Description: AAA_10 Location: 4-91 bp Feature: gene Location: 823-2649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123-1822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1123-1822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII

Seq: QUCN01000091.1 Lachnospiraceae bacterium AM21-21 AM21-21.Scaf91, whole genome shotgun sequence (1250 bp)
Overview 1 RT 1: 81-1086 bp Neighborhood of RT #1 [81, 1247] RVT-GII GIIM Feature: gene Location: 81-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 186 -807 bp Feature: domain Description: GIIM Note: maturase Location: 861-1086 bp Feature: domain Description: GIIM Note: maturase Location: 86 1-1086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)