myRT

myRT report for GCA_003473955.1_ASM347395v1

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Seq: QRNC01000113.1 Bacteroides fragilis strain AF46-2GN AF46-2GN.Scaf113, whole genome shotgun sequence (9859 bp)
Overview 1 RT 1: 8-2740 bp Neighborhood of RT #1 [8, 2754] DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 8-250 bp Feature: domain Description: DUF4134 Location: 155-245 bp Feature: domain Description: DUF41 34 Location: 1 55-245 bp Feature: gene Location: 247-1902 bp Feature: RT Description: RVT_N Location: 304-541 bp Feature: RT Description: RVT_N Location: 304-541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-1240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592-1 240 bp Feature: domain Description: GIIM Note: maturase Location: 1297-1528 bp Feature: domain Description: GIIM Note: maturase Location: 1 297-1 528 bp Feature: gene Location: 2204-2497 bp Feature: gene Location: 2518-2754 bp Feature: domain Description: DUF4134 Location: 2563-2740 bp Feature: domain Description: DUF41 34 Location: 2563-2740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572)

Seq: QRNC01000025.1 Bacteroides fragilis strain AF46-2GN AF46-2GN.Scaf25, whole genome shotgun sequence (56508 bp)
Overview 1 RT 1: 27857-31922 bp Neighborhood of RT #1 [27857, 31981] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 27857-28858 bp Feature: domain Description: Bac_Flav_CT_J Location: 27884-28847 bp Feature: domain Description: Bac_Flav_CT_J Location: 2 7884-2 8847 bp Feature: gene Location: 28872-29408 bp Feature: gene Location: 29401-31236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29695-30517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9695-30517 bp Feature: domain Description: Intron_maturas2 Location: 30676-31045 bp Feature: domain Description: Intron_maturas2 Location: 30676-31045 bp Feature: domain Description: HNHc Note: nucleases Location: 31069-31210 bp Feature: domain Description: HNHc Note: nucleases Location: 31069-312 10 bp Feature: gene Location: 31556-31717 bp Feature: gene Location: 31757-31981 bp Feature: domain Description: DUF4141 Location: 31769-31922 bp Feature: domain Description: DUF4141 Location: 31769-3192 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QRNC01000005.1 Bacteroides fragilis strain AF46-2GN AF46-2GN.Scaf5, whole genome shotgun sequence (141451 bp)
Overview 1 RT 1: 62024-66930 bp Neighborhood of RT #1 [62024, 66930] rpsA rpsA RVT-Retrons Feature: gene Location: 62024-62914 bp Feature: domain Description: rpsA Location: 62027-62810 bp Feature: domain Description: rpsA Location: 62027-62810 bp Feature: gene Location: 62923-63816 bp Feature: domain Description: rpsA Location: 63001-63808 bp Feature: domain Description: rpsA Location: 63 001-63 808 bp Feature: gene Location: 63958-65070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64273-64822 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 64273 -64822 bp Feature: gene Location: 65277-66284 bp Feature: gene Location: 66352-66930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RVT-Retrons

Seq: QRNC01000053.1 Bacteroides fragilis strain AF46-2GN AF46-2GN.Scaf53, whole genome shotgun sequence (35797 bp)
Overview 1 RT 1: 20623-25123 bp Neighborhood of RT #1 [20623, 25158] Bac_Flav_CT_J SesA RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Feature: gene Location: 20623-21627 bp Feature: domain Description: Bac_Flav_CT_J Location: 20629-21598 bp Feature: domain Description: Bac_Flav_CT_J Location: 20629-21598 bp Feature: gene Location: 21631-22221 bp Feature: domain Description: SesA Location: 21766-22096 bp Feature: domain Description: SesA Location: 21766-22096 bp Feature: gene Location: 22208-24016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22472-23294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224 72-23294 bp Feature: domain Description: Intron_maturas2 Location: 23390-23729 bp Feature: domain Description: Intron_maturas2 Location: 23390-23729 bp Feature: domain Description: HNHc Note: nucleases Location: 23837-23990 bp Feature: domain Description: HNHc Note: nucleases Location: 23837-23990 bp Feature: gene Location: 24575-24754 bp Feature: domain Description: DUF4141 Location: 24590-24740 bp Feature: domain Description: DUF4 14 1 Location: 24 590-24 74 0 bp Feature: gene Location: 24778-25158 bp Feature: domain Description: DUF3876 Location: 24859-25123 bp Feature: domain Description: DUF3876 Location: 24 859-25123 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), SesA (pfam17107), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992)

Seq: QRNC01000009.1 Bacteroides fragilis strain AF46-2GN AF46-2GN.Scaf9, whole genome shotgun sequence (106054 bp)
Overview 1 RT 1: 25315-27331 bp Neighborhood of RT #1 [25315, 27331] RVT-GII HTH_28 Feature: gene Location: 25315-25677 bp Feature: gene Location: 25681-25890 bp Feature: gene Location: 25920-26117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25923-26115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 923-26115 bp Feature: gene Location: 26238-26528 bp Feature: domain Description: HTH_28 Location: 26262-26409 bp Feature: domain Description: HTH_28 Location: 26262-26409 bp Feature: gene Location: 26957-27331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)