myRT

myRT report for GCA_003473975.1_ASM347397v1

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Seq: QRNE01000136.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf136, whole genome shotgun sequence (16643 bp)
Overview 1 RT 1: 5242-8578 bp Neighborhood of RT #1 [5242, 8578] TraG-D_C GIIM RVT_N RVT-GII Feature: gene Location: 5242-6456 bp Feature: domain Description: TraG-D_C Location: 5824-6154 bp Feature: domain Description: TraG-D_C Location: 5824-61 54 bp Feature: gene Location: 6461-7027 bp Feature: domain Description: GIIM Note: maturase Location: 6470-6650 bp Feature: domain Description: GIIM Note: maturase Location: 6470-6650 bp Feature: gene Location: 7006-8112 bp Feature: domain Description: RVT_N Location: 7060-7303 bp Feature: domain Description: RVT_N Location: 7060-7303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7348-7996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7348-7996 bp Feature: gene Location: 8194-8367 bp Feature: gene Location: 8429-8578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), GIIM (pfam08388), RVT_N (pfam13655), RVT-GII

Seq: QRNE01000267.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf267, whole genome shotgun sequence (3446 bp)
Overview 1 RT 1: 1051-2806 bp Neighborhood of RT #1 [1051, 3006] RVT-GII GIIM Feature: gene Location: 1051-1302 bp Feature: gene Location: 1314-1478 bp Feature: gene Location: 1711-3006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2521 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906-2 52 1 bp Feature: domain Description: GIIM Note: maturase Location: 2593-2806 bp Feature: domain Description: GIIM Note: maturase Location: 2 593-2 806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRNE01000286.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf286, whole genome shotgun sequence (2486 bp)
Overview 1 RT 1: 564-2028 bp Neighborhood of RT #1 [564, 2372] RVT-GII Intron_maturas2 Feature: gene Location: 564-2372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828-1650 bp Feature: domain Description: Intron_maturas2 Location: 1719-2028 bp Feature: domain Description: Intron_maturas2 Location: 1719-2028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRNE01000293.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf293, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 430-1643 bp Neighborhood of RT #1 [430, 1643] HTH_28 RVT-GII Feature: gene Location: 430-720 bp Feature: domain Description: HTH_28 Location: 454-598 bp Feature: domain Description: HTH_28 Location: 4 54 -598 bp Feature: gene Location: 841-1038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 844-1036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 4 -1036 bp Feature: gene Location: 1068-1277 bp Feature: gene Location: 1281-1643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: QRNE01000042.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf42, whole genome shotgun sequence (37888 bp)
Overview 1 RT 1: 20730-26574 bp Neighborhood of RT #1 [20730, 26588] DUF4141 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 20730-21350 bp Feature: domain Description: DUF4141 Location: 20745-20883 bp Feature: domain Description: DUF4141 Location: 20745 -20883 bp Feature: gene Location: 21363-23408 bp Feature: domain Description: Bac_Flav_CT_G Location: 21483-22953 bp Feature: domain Description: Bac_Flav_CT_G Location: 21483-2295 3 bp Feature: gene Location: 23405-25066 bp Feature: domain Description: RVT_N Location: 23459-23702 bp Feature: domain Description: RVT_N Location: 2345 9-23702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23747-24395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23747-24395 bp Feature: domain Description: GIIM Note: maturase Location: 24449-24680 bp Feature: domain Description: GIIM Note: maturase Location: 24449-24680 bp Feature: gene Location: 25148-25528 bp Feature: gene Location: 25650-26588 bp Feature: domain Description: Bac_Flav_CT_G Location: 25653-26574 bp Feature: domain Description: Bac_Flav_CT_G Location: 25 65 3-265 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRNE01000066.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf66, whole genome shotgun sequence (31522 bp)
Overview 1 RT 1: 12487-22759 bp Neighborhood of RT #1 [12487, 22759] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 12487-18516 bp Feature: domain Description: DUF1566 Location: 18202-18505 bp Feature: domain Description: DUF156 6 Location: 18202-18505 bp Feature: gene Location: 18646-19047 bp Feature: domain Description: Avd_like Location: 18685-19024 bp Feature: domain Description: Avd_like Location: 186 85-19024 bp Feature: gene Location: 19060-20481 bp Feature: domain Description: DUF1566 Location: 19132-19276 bp Feature: domain Description: DUF156 6 Location: 19132-19276 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19465-20206 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1946 5-20206 bp Feature: gene Location: 20472-20825 bp Feature: gene Location: 20888-22759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QRNE01000079.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf79, whole genome shotgun sequence (25727 bp)
Overview 1 RT 1: 14147-17804 bp Neighborhood of RT #1 [14147, 17804] RVT-UG27 Feature: gene Location: 14147-14605 bp Feature: gene Location: 15098-15307 bp Feature: gene Location: 15624-16892 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 15813-16449 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 15813-16449 bp Feature: gene Location: 16889-17119 bp Feature: gene Location: 17202-17804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRNE01000086.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf86, whole genome shotgun sequence (25018 bp)
Overview 1 RT 1: 18683-24721 bp Neighborhood of RT #1 [18683, 24870] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons CheY Feature: gene Location: 18683-19261 bp Feature: domain Description: NGN_SP_UpxY Location: 18761-19043 bp Feature: domain Description: NGN_SP_UpxY Location: 18 761-19043 bp Feature: domain Description: KOW_NusG Location: 19094-19205 bp Feature: domain Description: KOW_NusG Location: 19094-19205 bp Feature: gene Location: 19598-20563 bp Feature: domain Description: Phage_int_SAM_5 Location: 19631-19874 bp Feature: domain Description: Phage_int_SAM_5 Location: 19631-198 74 bp Feature: domain Description: INTN1_C_like Location: 19958-20477 bp Feature: domain Description: INTN1_C_like Location: 19958 -20477 bp Feature: gene Location: 20839-23058 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21040-21625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21040-21625 bp Feature: gene Location: 23036-23680 bp Feature: gene Location: 23689-24870 bp Feature: domain Description: CheY Location: 24331-24721 bp Feature: domain Description: CheY Location: 24331-24721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, CheY (COG0784)

Seq: QRNE01000088.1 Bacteroides xylanisolvens strain AF46-11NS AF46-11NS.Scaf88, whole genome shotgun sequence (24398 bp)
Overview 1 RT 1: 6601-19001 bp Neighborhood of RT #1 [6601, 19138] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 6601-8400 bp Feature: domain Description: rpsA Location: 6670-8269 bp Feature: domain Description: rpsA Location: 6670-8269 bp Feature: gene Location: 8497-14538 bp Feature: domain Description: DUF4011 Location: 9727-10240 bp Feature: domain Description: DUF4011 Location: 9 727-10240 bp Feature: domain Description: DEXXQc_SF1 Location: 10579-11020 bp Feature: domain Description: DEXXQc_SF1 Location: 10579 -11020 bp Feature: domain Description: DEXXQc_SF1 Location: 12007-12766 bp Feature: domain Description: DEXXQc_SF1 Location: 12007-12766 bp Feature: domain Description: TIGR00376 Location: 12895-13285 bp Feature: domain Description: TIGR00376 Location: 1289 5-13285 bp Feature: domain Description: MTES_1575 Location: 13438-13723 bp Feature: domain Description: MTES_1575 Location: 13438-13723 bp Feature: domain Description: DUF3320 Location: 14053-14188 bp Feature: domain Description: DUF3320 Location: 14053-14188 bp Feature: gene Location: 14589-15719 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14910-15453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 149 10-15453 bp Feature: gene Location: 15926-18133 bp Feature: gene Location: 18302-19138 bp Feature: domain Description: PDDEXK_2 Location: 18323-19001 bp Feature: domain Description: PDDEXK_2 Location: 18323-19 001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)