myRT

myRT report for GCA_003474125.1_ASM347412v1

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Seq: QRNV01000019.1 Bacteroides uniformis strain AF42-11 AF42-11.Scaf19, whole genome shotgun sequence (86109 bp)
Overview 1 RT 1: 1500-4454 bp Neighborhood of RT #1 [1500, 4522] RVT-Retrons COG3943 Feature: gene Location: 1500-1634 bp Feature: gene Location: 1783-1998 bp Feature: gene Location: 2176-2979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2284-2809 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2284-2809 bp Feature: gene Location: 3010-3891 bp Feature: gene Location: 4157-4522 bp Feature: domain Description: COG3943 Location: 4196-4454 bp Feature: domain Description: COG3943 Location: 41 96-4454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: QRNV01000002.1 Bacteroides uniformis strain AF42-11 AF42-11.Scaf2, whole genome shotgun sequence (349356 bp)
Overview 1 RT 1: 294227-298619 bp Neighborhood of RT #1 [294227, 298864] RVT-Retrons DNA_processg_A Feature: gene Location: 294227-294355 bp Feature: gene Location: 294409-295311 bp Feature: gene Location: 295304-296767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 295505-296135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 95505-2 96135 bp Feature: gene Location: 297115-297903 bp Feature: gene Location: 297938-298864 bp Feature: domain Description: DNA_processg_A Location: 298145-298619 bp Feature: domain Description: DNA_processg_A Location: 2 98145-2 98619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DNA_processg_A (pfam02481)

Seq: QRNV01000067.1 Bacteroides uniformis strain AF42-11 AF42-11.Scaf67, whole genome shotgun sequence (3232 bp)
Overview 1 RT 1: 3-3079 bp Neighborhood of RT #1 [3, 3079] DUF4141 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3-194 bp Feature: domain Description: DUF4141 Location: 12-135 bp Feature: domain Description: DUF4141 Location: 12-13 5 bp Feature: gene Location: 234-395 bp Feature: gene Location: 715-2550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-1831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-183 1 bp Feature: domain Description: Intron_maturas2 Location: 1990-2359 bp Feature: domain Description: Intron_maturas2 Location: 1990-23 59 bp Feature: domain Description: HNHc Note: nucleases Location: 2383-2524 bp Feature: domain Description: HNHc Note: nucleases Location: 23 83 -2524 bp Feature: gene Location: 2543-3079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QRNV01000072.1 Bacteroides uniformis strain AF42-11 AF42-11.Scaf72, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 114-1581 bp Neighborhood of RT #1 [114, 1922] RVT-GII Intron_maturas2 Feature: gene Location: 114-1922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: domain Description: Intron_maturas2 Location: 1311-1581 bp Feature: domain Description: Intron_maturas2 Location: 1311-1581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)