myRT

myRT report for GCA_003474245.1_ASM347424v1

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Seq: QROC01000019.1 Bacteroides xylanisolvens strain AF39-6AC AF39-6AC.Scaf19, whole genome shotgun sequence (109729 bp)
Overview 1 RT 1: 1273-13680 bp Neighborhood of RT #1 [1273, 13811] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Feature: gene Location: 1273-2109 bp Feature: domain Description: PDDEXK_2 Location: 1294-1972 bp Feature: domain Description: PDDEXK_2 Location: 1 294-1 972 bp Feature: gene Location: 2278-4485 bp Feature: gene Location: 4693-5823 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5014-5557 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 501 4-5557 bp Feature: gene Location: 5874-11915 bp Feature: domain Description: DUF4011 Location: 7104-7617 bp Feature: domain Description: DUF401 1 Location: 71 04-761 7 bp Feature: domain Description: DEXXQc_SF1 Location: 7956-8397 bp Feature: domain Description: DEXXQc_SF1 Location: 7956-8397 bp Feature: domain Description: DEXXQc_SF1 Location: 9387-10143 bp Feature: domain Description: DEXXQc_SF1 Location: 9387-1 01 43 bp Feature: domain Description: SF1_C_Upf1 Location: 10152-10662 bp Feature: domain Description: SF1 _C_Upf1 Location: 1 01 52-1 0662 bp Feature: domain Description: MTES_1575 Location: 10815-11100 bp Feature: domain Description: MTES_1 575 Location: 1 081 5-1 1 1 00 bp Feature: domain Description: DUF3320 Location: 11430-11565 bp Feature: domain Description: DUF3320 Location: 1 1 430-1 1 565 bp Feature: gene Location: 12012-13811 bp Feature: domain Description: rpsA Location: 12081-13680 bp Feature: domain Description: rpsA Location: 1 2081 -1 3680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QROC01000003.1 Bacteroides xylanisolvens strain AF39-6AC AF39-6AC.Scaf3, whole genome shotgun sequence (264210 bp)
Overview 1 RT 1: 164288-167738 bp Neighborhood of RT #1 [164288, 167806] RVT-GII GIIM KOG1206 Feature: gene Location: 164288-164584 bp Feature: gene Location: 164689-164826 bp Feature: gene Location: 164960-166426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165350-165965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165350-165965 bp Feature: domain Description: GIIM Note: maturase Location: 166019-166232 bp Feature: domain Description: GIIM Note: maturase Location: 166019-1662 32 bp Feature: gene Location: 166513-167139 bp Feature: gene Location: 167495-167806 bp Feature: domain Description: KOG1206 Location: 167525-167738 bp Feature: domain Description: KOG12 06 Location: 16752 5-167738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1206 (KOG1206, Peroxisomal multifunctional beta-oxidation protein and related enzymes )

Seq: QROC01000032.1 Bacteroides xylanisolvens strain AF39-6AC AF39-6AC.Scaf32, whole genome shotgun sequence (70076 bp)
Overview 1 RT 1: 19842-22316 bp Neighborhood of RT #1 [19842, 22316] RVT_N RVT-GII GIIM Feature: gene Location: 19842-19988 bp Feature: gene Location: 19995-20225 bp Feature: gene Location: 20311-21813 bp Feature: RT Description: RVT_N Location: 20377-20620 bp Feature: RT Description: RVT_N Location: 203 77-20620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20665-21307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20665-213 07 bp Feature: domain Description: GIIM Note: maturase Location: 21364-21595 bp Feature: domain Description: GIIM Note: maturase Location: 213 64-21595 bp Feature: gene Location: 21638-22000 bp Feature: gene Location: 22149-22316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QROC01000042.1 Bacteroides xylanisolvens strain AF39-6AC AF39-6AC.Scaf42, whole genome shotgun sequence (37323 bp)
Overview 1 RT 1: 21305-27345 bp Neighborhood of RT #1 [21305, 28001] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 21305-21883 bp Feature: domain Description: NGN_SP_UpxY Location: 21383-21665 bp Feature: domain Description: NGN_SP_UpxY Location: 21383-21665 bp Feature: domain Description: KOW_NusG Location: 21716-21827 bp Feature: domain Description: KOW_NusG Location: 21716-21827 bp Feature: gene Location: 22219-23184 bp Feature: domain Description: Phage_int_SAM_5 Location: 22252-22495 bp Feature: domain Description: Phage_int_SAM_5 Location: 22252-224 95 bp Feature: domain Description: INTN1_C_like Location: 22576-23098 bp Feature: domain Description: INTN1_C_like Location: 22576-23098 bp Feature: gene Location: 23460-25679 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23661-24246 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23661-24 24 6 bp Feature: gene Location: 25657-26301 bp Feature: gene Location: 26310-28001 bp Feature: domain Description: REC Location: 27114-27345 bp Feature: domain Description: REC Location: 27114 -2734 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: QROC01000007.1 Bacteroides xylanisolvens strain AF39-6AC AF39-6AC.Scaf7, whole genome shotgun sequence (233865 bp)
Overview 1 RT 1: 216759-226275 bp Neighborhood of RT #1 [216759, 227480] DUF4065 PRK06917 N6_Mtase COG4646 RVT_N RVT-GII GIIM KAP_NTPase Feature: gene Location: 216759-217316 bp Feature: domain Description: DUF4065 Location: 216849-217176 bp Feature: domain Description: DUF4065 Location: 216849-217176 bp Feature: gene Location: 217907-221944 bp Feature: domain Description: PRK06917 Location: 217946-218165 bp Feature: domain Description: PRK06917 Location: 217946-218165 bp Feature: domain Description: N6_Mtase Location: 218399-218813 bp Feature: domain Description: N6_Mtase Location: 218399-218813 bp Feature: domain Description: COG4646 Location: 219596-221327 bp Feature: domain Description: COG4646 Location: 2195 96-221327 bp Feature: gene Location: 222601-224268 bp Feature: RT Description: RVT_N Location: 222655-222898 bp Feature: RT Description: RVT_N Location: 22265 5 -222898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222943-223591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222943-2235 91 bp Feature: domain Description: GIIM Note: maturase Location: 223645-223876 bp Feature: domain Description: GIIM Note: maturase Location: 223645 -223876 bp Feature: gene Location: 224222-225349 bp Feature: gene Location: 225591-227480 bp Feature: domain Description: KAP_NTPase Location: 225639-226275 bp Feature: domain Description: KAP_NTPase Location: 225 639-226275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4065 (pfam13274), PRK06917 (aspartate aminotransferase family protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KAP_NTPase (pfam07693)

Seq: QROC01000080.1 Bacteroides xylanisolvens strain AF39-6AC AF39-6AC.Scaf80, whole genome shotgun sequence (2209 bp)
Overview 1 RT 1: 106-2140 bp Neighborhood of RT #1 [106, 2140] RVT_N RVT-GII GIIM Feature: gene Location: 106-1653 bp Feature: RT Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT_N Location: 175-418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 3-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 116 2-1396 bp Feature: gene Location: 1693-1875 bp Feature: gene Location: 2009-2140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)