myRT

myRT report for GCA_003474345.1_ASM347434v1

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Seq: QROL01000023.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf23, whole genome shotgun sequence (71580 bp)
Overview 1 RT 1: 712-4684 bp Neighborhood of RT #1 [712, 5025] DUF1566 RVT-DGRs MutS_I TMAO_torS Feature: gene Location: 712-918 bp Feature: domain Description: DUF1566 Location: 754-889 bp Feature: domain Description: DUF1 566 Location: 754-889 bp Feature: gene Location: 937-1095 bp Feature: gene Location: 1159-2199 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1165-1855 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 65-1 855 bp Feature: gene Location: 2196-2672 bp Feature: domain Description: MutS_I Location: 2247-2442 bp Feature: domain Description: MutS_I Location: 2247-2442 bp Feature: gene Location: 2674-5025 bp Feature: domain Description: TMAO_torS Location: 3592-4684 bp Feature: domain Description: TMAO_torS Location: 3592-4684 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, MutS_I (pfam01624), TMAO_torS (TIGR02956)

Seq: QROL01000041.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf41, whole genome shotgun sequence (35398 bp)
Overview 1 RT 1: 18941-22625 bp Neighborhood of RT #1 [18941, 22786] RVT-GII GIIM HTH_XRE Couple_hipA HipA_C Feature: gene Location: 18941-19108 bp Feature: gene Location: 19115-19333 bp Feature: gene Location: 19646-20908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19850-20507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19850-2 0507 bp Feature: domain Description: GIIM Note: maturase Location: 20588-20816 bp Feature: domain Description: GIIM Note: maturase Location: 2 0588-2 0816 bp Feature: gene Location: 21177-21491 bp Feature: domain Description: HTH_XRE Location: 21234-21384 bp Feature: domain Description: HTH_XRE Location: 2 12 34-2 1384 bp Feature: gene Location: 21488-22786 bp Feature: domain Description: Couple_hipA Location: 21503-21854 bp Feature: domain Description: Couple_hipA Location: 2 1503-2 1854 bp Feature: domain Description: HipA_C Location: 22007-22625 bp Feature: domain Description: HipA_C Location: 2 2 007-2 2 62 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530), Couple_hipA (pfam13657), HipA_C (pfam07804)

Seq: QROL01000046.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf46, whole genome shotgun sequence (29618 bp)
Overview 1 RT 1: 12477-19361 bp Neighborhood of RT #1 [12477, 19361] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 12477-14024 bp Feature: domain Description: AAA_25 Location: 13092-13554 bp Feature: domain Description: AAA_25 Location: 13 092-13 554 bp Feature: gene Location: 14236-14418 bp Feature: gene Location: 14966-16774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15230-16052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523 0-16052 bp Feature: domain Description: Intron_maturas2 Location: 16121-16430 bp Feature: domain Description: Intron_maturas2 Location: 16121-1643 0 bp Feature: gene Location: 16728-17675 bp Feature: domain Description: Toprim_2 Location: 17298-17586 bp Feature: domain Description: Toprim_2 Location: 17298-17586 bp Feature: gene Location: 17958-19361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QROL01000059.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf59, whole genome shotgun sequence (15944 bp)
Overview 1 RT 1: 58-4847 bp Neighborhood of RT #1 [58, 4912] Hypoth_Ymh RVT-AbiP2 RVT-AbiP2 COG1373 DDE_Tnp_1 Feature: gene Location: 58-852 bp Feature: domain Description: Hypoth_Ymh Location: 475-829 bp Feature: domain Description: Hypoth_Ymh Location: 4 75-829 bp Feature: gene Location: 877-1647 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 892-1009 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 892-1009 bp Feature: gene Location: 1797-2558 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2226-2535 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2226-2535 bp Feature: gene Location: 2617-3876 bp Feature: domain Description: COG1373 Location: 2623-3856 bp Feature: domain Description: COG1373 Location: 2623-3856 bp Feature: gene Location: 4007-4912 bp Feature: domain Description: DDE_Tnp_1 Location: 4328-4847 bp Feature: domain Description: DDE_Tnp_1 Location: 4 328-4 84 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hypoth_Ymh (pfam09509), RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily ), DDE_Tnp_1 (pfam01609)

Seq: QROL01000072.1 Parabacteroides merdae strain AF38-4 AF38-4.Scaf72, whole genome shotgun sequence (9837 bp)
Overview 1 RT 1: 590-4703 bp Neighborhood of RT #1 [590, 4714] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 590-814 bp Feature: domain Description: DUF4141 Location: 602-755 bp Feature: domain Description: DUF4141 Location: 602-75 5 bp Feature: gene Location: 854-1015 bp Feature: gene Location: 1335-3170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1629-2451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1629-245 1 bp Feature: domain Description: Intron_maturas2 Location: 2610-2979 bp Feature: domain Description: Intron_maturas2 Location: 2610-2979 bp Feature: domain Description: HNHc Note: nucleases Location: 3003-3144 bp Feature: domain Description: HNHc Note: nucleases Location: 3003-3144 bp Feature: gene Location: 3163-3699 bp Feature: gene Location: 3713-4714 bp Feature: domain Description: Bac_Flav_CT_J Location: 3740-4703 bp Feature: domain Description: Bac_Flav_CT_J Location: 3740-4703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)