myRT

myRT report for GCA_003474645.1_ASM347464v1

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Seq: QROO01000010.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf10, whole genome shotgun sequence (171459 bp)
Overview 1 RT 1: 5500-9329 bp 2 RT 2: 15132-20740 bp 3 RT 3: 26301-33980 bp Neighborhood of RT #1 [5500, 9343] DUF3872 Toprim_2 RVT-GII Intron_maturas2 zf-CHC2 Neighborhood of RT #2 [15132, 20751] RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #3 [26301, 33980] YWFCY RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 5500-6003 bp Feature: domain Description: DUF3872 Location: 5551-5938 bp Feature: domain Description: DUF3872 Location: 5551 -5938 bp Feature: gene Location: 6000-6833 bp Feature: domain Description: Toprim_2 Location: 6552-6810 bp Feature: domain Description: Toprim_2 Location: 6552-681 0 bp Feature: gene Location: 6805-8613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7069-7891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7069-7891 bp Feature: domain Description: Intron_maturas2 Location: 7960-8269 bp Feature: domain Description: Intron_maturas2 Location: 7960-8269 bp Feature: gene Location: 8902-9045 bp Feature: gene Location: 9161-9343 bp Feature: domain Description: zf-CHC2 Location: 9188-9329 bp Feature: domain Description: zf-CHC2 Location: 91 88-9329 bp Feature: gene Location: 15132-15719 bp Feature: gene Location: 15732-15887 bp Feature: gene Location: 15963-17786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16227-17049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6227-1 7049 bp Feature: domain Description: Intron_maturas2 Location: 17223-17466 bp Feature: domain Description: Intron_maturas2 Location: 1 7223-1 7466 bp Feature: domain Description: HNHc Note: nucleases Location: 17577-17748 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7577-1 7748 bp Feature: gene Location: 18044-18232 bp Feature: gene Location: 18355-20751 bp Feature: domain Description: Bac_Flav_CT_G Location: 18358-20740 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 8358-20740 bp Feature: gene Location: 26301-27032 bp Feature: domain Description: YWFCY Location: 26307-26484 bp Feature: domain Description: YWFCY Location: 26307-26484 bp Feature: gene Location: 27153-27401 bp Feature: gene Location: 27580-29412 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27865-28684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27865-28684 bp Feature: domain Description: Intron_maturas2 Location: 28759-29068 bp Feature: domain Description: Intron_maturas2 Location: 28759-29068 bp Feature: domain Description: HNHc Note: nucleases Location: 29242-29386 bp Feature: domain Description: HNHc Note: nucleases Location: 29242-29386 bp Feature: gene Location: 29399-29743 bp Feature: gene Location: 30380-32032 bp Feature: domain Description: RVT_N Location: 30434-30677 bp Feature: domain Description: RVT_N Location: 30434-30677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30722-31370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30722-31 370 bp Feature: domain Description: GIIM Note: maturase Location: 31424-31655 bp Feature: domain Description: GIIM Note: maturase Location: 31 424-31 655 bp Feature: gene Location: 32037-33272 bp Feature: domain Description: TraG-D_C Location: 32619-32952 bp Feature: domain Description: TraG-D_C Location: 3261 9-32952 bp Feature: gene Location: 33444-33980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3872 (pfam12988), Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348), zf-CHC2 (pfam01807), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), YWFCY (pfam14293), RVT_N (pfam13655), GIIM (pfam08388)
TraG-D_C (pfam12696)

Seq: QROO01000002.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf2, whole genome shotgun sequence (337424 bp)
Overview 1 RT 1: 108391-111272 bp Neighborhood of RT #1 [108391, 111358] FCS HTH_17 HTH_17 HTH_17 HTH_17 RVT-GII group_II_RT_mat DDE_Tnp_IS66_C Feature: gene Location: 108391-109332 bp Feature: domain Description: FCS Location: 108403-108484 bp Feature: domain Description: FCS Location: 108403-108484 bp Feature: domain Description: HTH_17 Location: 108565-108715 bp Feature: domain Description: HTH_17 Location: 108565-108715 bp Feature: domain Description: HTH_17 Location: 108832-108967 bp Feature: domain Description: HTH_17 Location: 108832 -108967 bp Feature: domain Description: HTH_17 Location: 109006-109141 bp Feature: domain Description: HTH_17 Location: 109006-109141 bp Feature: domain Description: HTH_17 Location: 109171-109318 bp Feature: domain Description: HTH_17 Location: 109171-109318 bp Feature: gene Location: 109745-109978 bp Feature: gene Location: 110383-110703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110386-110623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110386-11062 3 bp Feature: gene Location: 110760-111062 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 110808-111045 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 110808-111045 bp Feature: gene Location: 111158-111358 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 111170-111272 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 111170-1112 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FCS (LOAD_FCS), HTH_17 (pfam12728), RVT-GII, group_II_RT_mat (TIGR04416), DDE_Tnp_IS66_C (pfam13817)

Seq: QROO01000020.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf20, whole genome shotgun sequence (132772 bp)
Overview 1 RT 1: 78426-90806 bp Neighborhood of RT #1 [78426, 90937] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 78426-79250 bp Feature: domain Description: PDDEXK_2 Location: 78447-79125 bp Feature: domain Description: PDDEXK_2 Location: 78447-79125 bp Feature: gene Location: 79419-81626 bp Feature: gene Location: 81834-82964 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82155-82698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82155-82698 bp Feature: gene Location: 83015-89041 bp Feature: domain Description: DUF4011 Location: 84245-84758 bp Feature: domain Description: DUF4011 Location: 84245-84758 bp Feature: domain Description: DEXXQc_SF1 Location: 85097-85520 bp Feature: domain Description: DEXXQc_SF1 Location: 85097-85520 bp Feature: domain Description: DEXXQc_SF1 Location: 86525-87284 bp Feature: domain Description: DEXXQc_SF1 Location: 86525-87284 bp Feature: domain Description: KOG1803 Location: 87419-87797 bp Feature: domain Description: KOG1803 Location: 87419-87797 bp Feature: domain Description: MTES_1575 Location: 87956-88241 bp Feature: domain Description: MTES_1575 Location: 87956-88241 bp Feature: domain Description: DUF3320 Location: 88556-88691 bp Feature: domain Description: DUF3 3 20 Location: 88556-88691 bp Feature: gene Location: 89138-90937 bp Feature: domain Description: rpsA Location: 89207-90806 bp Feature: domain Description: rpsA Location: 89207-90806 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QROO01000023.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf23, whole genome shotgun sequence (120874 bp)
Overview 1 RT 1: 2850-10411 bp Neighborhood of RT #1 [2850, 10452] CE4_NodB_like_3 DUF2723 RVT_N RVT-GII GIIM Gp49 HTH_XRE Feature: gene Location: 2850-3464 bp Feature: domain Description: CE4_NodB_like_3 Location: 2931-3456 bp Feature: domain Description: CE4 _NodB_like_3 Location: 2931-34 56 bp Feature: gene Location: 3575-6988 bp Feature: domain Description: DUF2723 Location: 3680-4211 bp Feature: domain Description: DUF2723 Location: 3680-4 211 bp Feature: gene Location: 8129-9676 bp Feature: domain Description: RVT_N Location: 8198-8441 bp Feature: domain Description: RVT_N Location: 8198-84 4 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8486-9131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 86-9131 bp Feature: domain Description: GIIM Note: maturase Location: 9185-9419 bp Feature: domain Description: GIIM Note: maturase Location: 9185-94 19 bp Feature: gene Location: 9822-10130 bp Feature: domain Description: Gp49 Location: 9840-10104 bp Feature: domain Description: Gp4 9 Location: 984 0-10104 bp Feature: gene Location: 10135-10452 bp Feature: domain Description: HTH_XRE Location: 10249-10411 bp Feature: domain Description: HTH_XRE Location: 1024 9-104 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_NodB_like_3 (cd10959), DUF2723 (pfam11028), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Gp49 (pfam05973), HTH_XRE (smart00530)

Seq: QROO01000031.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf31, whole genome shotgun sequence (92261 bp)
Overview 1 RT 1: 17940-21928 bp Neighborhood of RT #1 [17940, 22002] HTH_17 RVT-UG2 COG3943 Feature: gene Location: 17940-18305 bp Feature: domain Description: HTH_17 Location: 18075-18213 bp Feature: domain Description: HTH_17 Location: 18075 -18213 bp Feature: gene Location: 18645-18851 bp Feature: gene Location: 18885-20468 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19122-20082 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 19122-20082 bp Feature: gene Location: 20480-21472 bp Feature: gene Location: 21637-22002 bp Feature: domain Description: COG3943 Location: 21676-21928 bp Feature: domain Description: COG3943 Location: 21676-21928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG2, COG3943 (Uncharacterized conserved protein )

Seq: QROO01000033.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf33, whole genome shotgun sequence (79833 bp)
Overview 1 RT 1: 57901-62048 bp Neighborhood of RT #1 [57901, 62048] Phage_Mu_F LPD3 RVT-DGRs Feature: gene Location: 57901-59112 bp Feature: domain Description: Phage_Mu_F Location: 58198-58483 bp Feature: domain Description: Phage_Mu_F Location: 58198-58483 bp Feature: domain Description: LPD3 Location: 58753-59035 bp Feature: domain Description: LPD3 Location: 58753-59035 bp Feature: gene Location: 59210-59443 bp Feature: gene Location: 59819-61120 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 60032-60629 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6 0032-6 06 29 bp Feature: gene Location: 61117-61602 bp Feature: gene Location: 61806-62048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_Mu_F (pfam04233), LPD3 (pfam18798), RVT-DGRs

Seq: QROO01000052.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf52, whole genome shotgun sequence (36578 bp)
Overview 1 RT 1: 21093-26282 bp Neighborhood of RT #1 [21093, 26296] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 21093-21407 bp Feature: domain Description: DUF3876 Location: 21147-21396 bp Feature: domain Description: DUF387 6 Location: 21147 -21396 bp Feature: gene Location: 21422-23116 bp Feature: domain Description: Bac_Flav_CT_G Location: 21542-23108 bp Feature: domain Description: Bac_Flav_CT_G Location: 21542-23108 bp Feature: gene Location: 23113-24774 bp Feature: domain Description: RVT_N Location: 23167-23410 bp Feature: domain Description: RVT_N Location: 23167 -23410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23455-24103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23455-24103 bp Feature: domain Description: GIIM Note: maturase Location: 24157-24388 bp Feature: domain Description: GIIM Note: maturase Location: 24157 -24388 bp Feature: gene Location: 24856-25236 bp Feature: gene Location: 25358-26296 bp Feature: domain Description: Bac_Flav_CT_G Location: 25361-26282 bp Feature: domain Description: Bac_Flav_CT_G Location: 25361-26282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QROO01000006.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf6, whole genome shotgun sequence (220315 bp)
Overview 1 RT 1: 216393-219400 bp Neighborhood of RT #1 [216393, 219400] RVT-GII GIIM Feature: gene Location: 216393-216800 bp Feature: gene Location: 216846-217067 bp Feature: gene Location: 217378-218673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217573-218188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217573-218 18 8 bp Feature: domain Description: GIIM Note: maturase Location: 218260-218473 bp Feature: domain Description: GIIM Note: maturase Location: 218 260-218 473 bp Feature: gene Location: 218906-219070 bp Feature: gene Location: 219203-219400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QROO01000007.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf7, whole genome shotgun sequence (214037 bp)
Overview 1 RT 1: 96188-99845 bp 2 RT 2: 139852-150082 bp Neighborhood of RT #1 [96188, 99845] RVT-UG27 Neighborhood of RT #2 [139852, 150082] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 96188-96784 bp Feature: gene Location: 97139-97348 bp Feature: gene Location: 97665-98933 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 97854-98490 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 9 7854-9 849 0 bp Feature: gene Location: 98930-99160 bp Feature: gene Location: 99243-99845 bp Feature: gene Location: 139852-145881 bp Feature: domain Description: DUF1566 Location: 145567-145870 bp Feature: domain Description: DUF1566 Location: 145567-145870 bp Feature: gene Location: 146011-146412 bp Feature: domain Description: Avd_like Location: 146050-146389 bp Feature: domain Description: Avd_like Location: 146050-146389 bp Feature: gene Location: 146425-147846 bp Feature: domain Description: DUF1566 Location: 146497-146641 bp Feature: domain Description: DUF1566 Location: 14649 7-146641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 146830-147571 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 146830-147571 bp Feature: gene Location: 147837-148190 bp Feature: gene Location: 148253-150082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QROO01000080.1 Bacteroides xylanisolvens strain AF38-2 AF38-2.Scaf80, whole genome shotgun sequence (7497 bp)
Overview 1 RT 1: 2686-7422 bp Neighborhood of RT #1 [2686, 7422] AtoC TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 2686-3966 bp Feature: domain Description: AtoC Location: 2689-3961 bp Feature: domain Description: AtoC Location: 2689-3961 bp Feature: gene Location: 4054-5298 bp Feature: domain Description: TraG-D_C Location: 4636-4969 bp Feature: domain Description: TraG-D_C Location: 4636-4969 bp Feature: gene Location: 5303-6955 bp Feature: domain Description: RVT_N Location: 5357-5600 bp Feature: domain Description: RVT_N Location: 5357-5600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5645-6293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5645-6293 bp Feature: domain Description: GIIM Note: maturase Location: 6347-6578 bp Feature: domain Description: GIIM Note: maturase Location: 6347-6578 bp Feature: gene Location: 7121-7255 bp Feature: gene Location: 7273-7422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtoC (COG2204), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)