myRT

myRT report for GCA_003474845.1_ASM347484v1

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Seq: QRPG01000001.1 Bacteroides vulgatus strain AF36-14BH AF36-14BH.Scaf1, whole genome shotgun sequence (413846 bp)
Overview 1 RT 1: 352331-355977 bp Neighborhood of RT #1 [352331, 355977] RVT-DGRs Feature: gene Location: 352331-352711 bp Feature: gene Location: 352708-353136 bp Feature: gene Location: 353099-354286 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 353432-354059 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 353432-354059 bp Feature: gene Location: 354407-354562 bp Feature: gene Location: 354616-355977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRPG01000105.1 Bacteroides vulgatus strain AF36-14BH AF36-14BH.Scaf105, whole genome shotgun sequence (1922 bp)
Overview 1 RT 1: 93-1311 bp Neighborhood of RT #1 [93, 1499] RVT-GII GIIM Feature: gene Location: 93-1499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1053 bp Feature: domain Description: GIIM Note: maturase Location: 1110-1311 bp Feature: domain Description: GIIM Note: maturase Location: 1110-1311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QRPG01000018.1 Bacteroides vulgatus strain AF36-14BH AF36-14BH.Scaf18, whole genome shotgun sequence (91658 bp)
Overview 1 RT 1: 47440-56883 bp 2 RT 2: 79097-85032 bp Neighborhood of RT #1 [47440, 56883] Laminin_G_3 Laminin_G_3 RVT-DGRs Neighborhood of RT #2 [79097, 85049] RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 HTH_17 HTH_17 HTH_17 Feature: gene Location: 47440-54159 bp Feature: domain Description: Laminin_G_3 Location: 48883-48961 bp Feature: domain Description: Laminin_G_3 Location: 48883 -48961 bp Feature: domain Description: Laminin_G_3 Location: 49612-50038 bp Feature: domain Description: Laminin_G_3 Location: 49612-5003 8 bp Feature: gene Location: 54403-54573 bp Feature: gene Location: 54675-55979 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54888-55482 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 54888-55482 bp Feature: gene Location: 55976-56461 bp Feature: gene Location: 56641-56883 bp Feature: gene Location: 79097-79873 bp Feature: gene Location: 80156-81454 bp Feature: gene Location: 81595-82638 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81817-82396 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81817-823 96 bp Feature: gene Location: 82747-83853 bp Feature: domain Description: Arm-DNA-bind_5 Location: 82771-82978 bp Feature: domain Description: Arm-DNA-bind_5 Location: 82771-82978 bp Feature: domain Description: Phage_int_SAM_5 Location: 83035-83302 bp Feature: domain Description: Phage_int_SAM_5 Location: 83 03 5-83 3 02 bp Feature: domain Description: INTN1_C_like Location: 83362-83821 bp Feature: domain Description: INTN1_C_like Location: 83 3 62-83 821 bp Feature: gene Location: 83946-85049 bp Feature: domain Description: HTH_17 Location: 84348-84483 bp Feature: domain Description: HTH_17 Location: 843 48-84483 bp Feature: domain Description: HTH_17 Location: 84549-84696 bp Feature: domain Description: HTH_17 Location: 84549-84696 bp Feature: domain Description: HTH_17 Location: 84723-84852 bp Feature: domain Description: HTH_17 Location: 84723 -84852 bp Feature: domain Description: HTH_17 Location: 84891-85032 bp Feature: domain Description: HTH_17 Location: 84891-8503 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs, RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)

Seq: QRPG01000009.1 Bacteroides vulgatus strain AF36-14BH AF36-14BH.Scaf9, whole genome shotgun sequence (108838 bp)
Overview 1 RT 1: 38831-42933 bp Neighborhood of RT #1 [38831, 42962] DUF4141 RVT-GII Intron_maturas2 HNHc SesA Bac_Flav_CT_J Feature: gene Location: 38831-39010 bp Feature: domain Description: DUF4141 Location: 38843-38996 bp Feature: domain Description: DUF4 14 1 Location: 3884 3-38996 bp Feature: gene Location: 39209-39538 bp Feature: gene Location: 39558-41375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39831-40653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39831-4 0653 bp Feature: domain Description: Intron_maturas2 Location: 40797-41013 bp Feature: domain Description: Intron_maturas2 Location: 4 0797-4 1013 bp Feature: domain Description: HNHc Note: nucleases Location: 41208-41352 bp Feature: domain Description: HNHc Note: nucleases Location: 4 1208-4 1352 bp Feature: gene Location: 41391-41954 bp Feature: domain Description: SesA Location: 41499-41829 bp Feature: domain Description: SesA Location: 4 14 99-4 1829 bp Feature: gene Location: 41958-42962 bp Feature: domain Description: Bac_Flav_CT_J Location: 41967-42933 bp Feature: domain Description: Bac_Flav_CT_J Location: 4 1967-4 2933 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SesA (pfam17107), Bac_Flav_CT_J (TIGR03782)