myRT

myRT report for GCA_003474945.1_ASM347494v1

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Seq: QRPN01000001.1 Bacteroides stercoris strain AF35-20 AF35-20.Scaf1, whole genome shotgun sequence (468090 bp)
Overview 1 RT 1: 298229-301437 bp Neighborhood of RT #1 [298229, 301437] RVT-UG27 Feature: gene Location: 298229-298507 bp Feature: gene Location: 298537-298803 bp Feature: gene Location: 298853-300115 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 299045-299681 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 299045-299681 bp Feature: gene Location: 300108-300776 bp Feature: gene Location: 300790-301437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRPN01000011.1 Bacteroides stercoris strain AF35-20 AF35-20.Scaf11, whole genome shotgun sequence (126393 bp)
Overview 1 RT 1: 101952-105901 bp Neighborhood of RT #1 [101952, 105901] RVT-DGRs Feature: gene Location: 101952-102242 bp Feature: gene Location: 102252-103613 bp Feature: gene Location: 103946-105133 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 104279-104906 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1042 79-104906 bp Feature: gene Location: 105096-105524 bp Feature: gene Location: 105521-105901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRPN01000003.1 Bacteroides stercoris strain AF35-20 AF35-20.Scaf3, whole genome shotgun sequence (343440 bp)
Overview 1 RT 1: 73307-82700 bp 2 RT 2: 192166-201619 bp Neighborhood of RT #1 [73307, 82700] RVT-DGRs Laminin_G_3 Laminin_G_3 Neighborhood of RT #2 [192166, 201777] DUF4365 AAA RVT-UG5 nitrilase Couple_hipA HipA_C HTH_XRE Feature: gene Location: 73307-73549 bp Feature: gene Location: 73729-74214 bp Feature: gene Location: 74211-75515 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74424-75018 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74424-75018 bp Feature: gene Location: 75617-82381 bp Feature: domain Description: Laminin_G_3 Location: 77060-77138 bp Feature: domain Description: Laminin_G_3 Location: 77060-7713 8 bp Feature: domain Description: Laminin_G_3 Location: 77789-78215 bp Feature: domain Description: Laminin_G_3 Location: 77789-78215 bp Feature: gene Location: 82395-82700 bp Feature: gene Location: 192166-196434 bp Feature: domain Description: DUF4365 Location: 192229-192586 bp Feature: domain Description: DUF43 65 Location: 192229-192586 bp Feature: domain Description: AAA Location: 192853-193171 bp Feature: domain Description: AAA Location: 192853 -193 171 bp Feature: gene Location: 196675-197292 bp Feature: gene Location: 197324-200209 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 197786-198275 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 197786-198275 bp Feature: domain Description: nitrilase Location: 199541-200117 bp Feature: domain Description: nitrilase Location: 199541-200117 bp Feature: gene Location: 200391-201467 bp Feature: domain Description: Couple_hipA Location: 200415-200736 bp Feature: domain Description: Couple_hipA Location: 200415-20073 6 bp Feature: domain Description: HipA_C Location: 200868-201456 bp Feature: domain Description: HipA_C Location: 200868-201456 bp Feature: gene Location: 201460-201777 bp Feature: domain Description: HTH_XRE Location: 201523-201619 bp Feature: domain Description: HTH_XRE Location: 201523 -201619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), DUF4365 (pfam14280), AAA (TIGR00769), RVT-UG5, nitrilase (cl11424), Couple_hipA (pfam13657), HipA_C (pfam07804), HTH_XRE (smart00530)

Seq: QRPN01000009.1 Bacteroides stercoris strain AF35-20 AF35-20.Scaf9, whole genome shotgun sequence (150891 bp)
Overview 1 RT 1: 14038-20480 bp Neighborhood of RT #1 [14038, 20480] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 14038-15105 bp Feature: domain Description: AAA_25 Location: 14173-14635 bp Feature: domain Description: AAA_25 Location: 14 173-14 635 bp Feature: gene Location: 15317-15499 bp Feature: gene Location: 16048-17856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16312-17134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16312-17134 bp Feature: domain Description: Intron_maturas2 Location: 17203-17512 bp Feature: domain Description: Intron_maturas2 Location: 17203-17512 bp Feature: gene Location: 17846-18757 bp Feature: domain Description: Toprim_2 Location: 18380-18668 bp Feature: domain Description: Toprim_2 Location: 18380-18668 bp Feature: gene Location: 19077-20480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)