myRT

myRT report for GCA_003474995.1_ASM347499v1

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Seq: QRPP01000001.1 Bacteroides stercoris strain AF35-14BH AF35-14BH.Scaf1, whole genome shotgun sequence (468075 bp)
Overview 1 RT 1: 166645-170578 bp Neighborhood of RT #1 [166645, 170578] RVT-UG27 Feature: gene Location: 166645-167292 bp Feature: gene Location: 167306-167974 bp Feature: gene Location: 167967-169229 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 168159-168795 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 681 59-1 68795 bp Feature: gene Location: 169552-170049 bp Feature: gene Location: 170099-170578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRPP01000011.1 Bacteroides stercoris strain AF35-14BH AF35-14BH.Scaf11, whole genome shotgun sequence (126381 bp)
Overview 1 RT 1: 101946-105895 bp Neighborhood of RT #1 [101946, 105895] RVT-DGRs Feature: gene Location: 101946-102236 bp Feature: gene Location: 102246-103607 bp Feature: gene Location: 103940-105127 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 104273-104900 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1042 73-104900 bp Feature: gene Location: 105090-105518 bp Feature: gene Location: 105515-105895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRPP01000003.1 Bacteroides stercoris strain AF35-14BH AF35-14BH.Scaf3, whole genome shotgun sequence (349084 bp)
Overview 1 RT 1: 136402-142750 bp 2 RT 2: 255479-264872 bp Neighborhood of RT #1 [136402, 146013] HTH_XRE Couple_hipA HipA_C RVT-UG5 nitrilase DUF4365 AAA Neighborhood of RT #2 [255479, 264872] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 136402-136719 bp Feature: domain Description: HTH_XRE Location: 136465-136561 bp Feature: domain Description: HTH_XRE Location: 13 6465-13 6561 bp Feature: gene Location: 136712-137788 bp Feature: domain Description: Couple_hipA Location: 136736-137057 bp Feature: domain Description: Couple_hipA Location: 13 673 6-13 7057 bp Feature: domain Description: HipA_C Location: 137189-137777 bp Feature: domain Description: HipA_C Location: 13 7189-13 7777 bp Feature: gene Location: 137970-140855 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 138432-138921 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 843 2-13 8921 bp Feature: domain Description: nitrilase Location: 140187-140763 bp Feature: domain Description: nitrilase Location: 140187-140763 bp Feature: gene Location: 140887-141504 bp Feature: gene Location: 141745-146013 bp Feature: domain Description: DUF4365 Location: 141808-142165 bp Feature: domain Description: DUF43 65 Location: 141808-142165 bp Feature: domain Description: AAA Location: 142432-142750 bp Feature: domain Description: AAA Location: 14243 2-142750 bp Feature: gene Location: 255479-255784 bp Feature: gene Location: 255798-262562 bp Feature: domain Description: Laminin_G_3 Location: 257241-257319 bp Feature: domain Description: Laminin_G_3 Location: 257241-2573 19 bp Feature: domain Description: Laminin_G_3 Location: 257970-258396 bp Feature: domain Description: Laminin_G_3 Location: 257970-2583 96 bp Feature: gene Location: 262664-263968 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 262877-263471 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 262877-263 471 bp Feature: gene Location: 263965-264450 bp Feature: gene Location: 264630-264872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Couple_hipA (pfam13657), HipA_C (pfam07804), RVT-UG5, nitrilase (cl11424), DUF4365 (pfam14280), AAA (TIGR00769), Laminin_G_3 (pfam13385), RVT-DGRs

Seq: QRPP01000009.1 Bacteroides stercoris strain AF35-14BH AF35-14BH.Scaf9, whole genome shotgun sequence (150837 bp)
Overview 1 RT 1: 130406-135527 bp Neighborhood of RT #1 [130406, 135527] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 130406-131809 bp Feature: gene Location: 132087-133016 bp Feature: domain Description: Toprim_2 Location: 132639-132927 bp Feature: domain Description: Toprim_2 Location: 132639-132927 bp Feature: gene Location: 132988-134796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133252-134074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133252-134 074 bp Feature: domain Description: Intron_maturas2 Location: 134143-134452 bp Feature: domain Description: Intron_maturas2 Location: 134 14 3-134 4 52 bp Feature: gene Location: 135086-135229 bp Feature: gene Location: 135345-135527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)