myRT

myRT report for GCA_003475165.1_ASM347516v1

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Seq: QROW01000002.1 Bacteroides stercoris strain AF37-11AC AF37-11AC.Scaf2, whole genome shotgun sequence (238133 bp)
Overview 1 RT 1: 143405-147552 bp Neighborhood of RT #1 [143405, 147552] Phage_Mu_F LPD3 RVT-DGRs Feature: gene Location: 143405-144616 bp Feature: domain Description: Phage_Mu_F Location: 143702-143987 bp Feature: domain Description: Phage_Mu_F Location: 1 43702-1 43987 bp Feature: domain Description: LPD3 Location: 144257-144539 bp Feature: domain Description: LPD3 Location: 1 44257-1 44539 bp Feature: gene Location: 144714-144947 bp Feature: gene Location: 145323-146624 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 145536-146130 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 45536-1 461 30 bp Feature: gene Location: 146621-147106 bp Feature: gene Location: 147310-147552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_Mu_F (pfam04233), LPD3 (pfam18798), RVT-DGRs

Seq: QROW01000005.1 Bacteroides stercoris strain AF37-11AC AF37-11AC.Scaf5, whole genome shotgun sequence (129888 bp)
Overview 1 RT 1: 83873-86719 bp Neighborhood of RT #1 [83873, 86719] HTH_XRE RVT-DGRs Feature: gene Location: 83873-84184 bp Feature: domain Description: HTH_XRE Location: 83987-84143 bp Feature: domain Description: HTH_XRE Location: 83987-84143 bp Feature: gene Location: 84215-84358 bp Feature: gene Location: 84435-85925 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84828-85425 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8482 8-8542 5 bp Feature: gene Location: 85994-86476 bp Feature: gene Location: 86483-86719 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-DGRs

Seq: QROW01000050.1 Bacteroides stercoris strain AF37-11AC AF37-11AC.Scaf50, whole genome shotgun sequence (19589 bp)
Overview 1 RT 1: 1794-11036 bp Neighborhood of RT #1 [1794, 11038] COG4646 Helicase_C matK RVT-GII Intron_maturas2 N6_Mtase N6_Mtase COG4646 DUF1896 Feature: gene Location: 1794-1934 bp Feature: gene Location: 2139-4904 bp Feature: domain Description: COG4646 Location: 2253-3393 bp Feature: domain Description: COG4646 Location: 2253 -3 3 93 bp Feature: domain Description: Helicase_C Location: 3603-3804 bp Feature: domain Description: Helicase_C Location: 3 603 -3 804 bp Feature: gene Location: 4891-6693 bp Feature: domain Description: matK Location: 4960-5047 bp Feature: domain Description: matK Location: 4960-5047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5155-5977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5155-5977 bp Feature: domain Description: Intron_maturas2 Location: 6127-6361 bp Feature: domain Description: Intron_maturas2 Location: 6127-63 61 bp Feature: gene Location: 7246-10461 bp Feature: domain Description: N6_Mtase Location: 7558-7666 bp Feature: domain Description: N6_Mtase Location: 7558-7666 bp Feature: domain Description: N6_Mtase Location: 7804-8161 bp Feature: domain Description: N6_Mtase Location: 7804-8161 bp Feature: domain Description: COG4646 Location: 9505-10450 bp Feature: domain Description: COG4646 Location: 9505-10450 bp Feature: gene Location: 10451-11038 bp Feature: domain Description: DUF1896 Location: 10616-11036 bp Feature: domain Description: DUF1896 Location: 10616-1103 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), N6_Mtase (pfam02384)

Seq: QROW01000009.1 Bacteroides stercoris strain AF37-11AC AF37-11AC.Scaf9, whole genome shotgun sequence (115431 bp)
Overview 1 RT 1: 109812-112911 bp Neighborhood of RT #1 [109812, 112925] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 109812-110174 bp Feature: domain Description: DUF4133 Location: 109857-110124 bp Feature: domain Description: DUF4 133 Location: 109857-110124 bp Feature: gene Location: 110185-110421 bp Feature: domain Description: DUF4134 Location: 110326-110416 bp Feature: domain Description: DUF4 134 Location: 110326-1104 16 bp Feature: gene Location: 110424-112079 bp Feature: RT Description: RVT_N Location: 110481-110718 bp Feature: RT Description: RVT_N Location: 1104 81-110718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110769-111417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110769-1114 17 bp Feature: domain Description: GIIM Note: maturase Location: 111474-111705 bp Feature: domain Description: GIIM Note: maturase Location: 1114 74 -111705 bp Feature: gene Location: 112381-112674 bp Feature: gene Location: 112695-112925 bp Feature: domain Description: DUF4134 Location: 112731-112911 bp Feature: domain Description: DUF4 134 Location: 112731-112911 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QROW01000090.1 Bacteroides stercoris strain AF37-11AC AF37-11AC.Scaf90, whole genome shotgun sequence (2495 bp)
Overview 1 RT 1: 114-1581 bp Neighborhood of RT #1 [114, 1922] RVT-GII Intron_maturas2 Feature: gene Location: 114-1922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: domain Description: Intron_maturas2 Location: 1326-1581 bp Feature: domain Description: Intron_maturas2 Location: 1326-15 81 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QROW01000091.1 Bacteroides stercoris strain AF37-11AC AF37-11AC.Scaf91, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 562-2026 bp Neighborhood of RT #1 [562, 2370] RVT-GII Intron_maturas2 Feature: gene Location: 562-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826-1648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 826 -16 48 bp Feature: domain Description: Intron_maturas2 Location: 1717-2026 bp Feature: domain Description: Intron_maturas2 Location: 1717-2026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)