myRT

myRT report for GCA_003475245.1_ASM347524v1

Download annotations/find similar RTs

Seq: QRPE01000010.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf10, whole genome shotgun sequence (162698 bp)
Overview 1 RT 1: 145616-149266 bp Neighborhood of RT #1 [145616, 149277] DUF3575 RVT-GII GIIM AraC_binding AraC Feature: gene Location: 145616-146170 bp Feature: domain Description: DUF3575 Location: 145634-146159 bp Feature: domain Description: DUF3575 Location: 1 45634-1 461 59 bp Feature: gene Location: 146313-146477 bp Feature: gene Location: 146575-147843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146788-147445 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46788-1 47445 bp Feature: domain Description: GIIM Note: maturase Location: 147526-147733 bp Feature: domain Description: GIIM Note: maturase Location: 1 47526-1 47733 bp Feature: gene Location: 148067-148246 bp Feature: gene Location: 148438-149277 bp Feature: domain Description: AraC_binding Location: 148507-148681 bp Feature: domain Description: AraC_binding Location: 1 48507-1 48681 bp Feature: domain Description: AraC Location: 148954-149266 bp Feature: domain Description: AraC Location: 1 48954-1 49266 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3575 (pfam12099), RVT-GII, GIIM (pfam08388), AraC_binding (pfam02311), AraC (COG2207)

Seq: QRPE01000018.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf18, whole genome shotgun sequence (114648 bp)
Overview 1 RT 1: 94916-105634 bp Neighborhood of RT #1 [94916, 105634] Relaxase RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc TraG-D_C Feature: gene Location: 94916-95164 bp Feature: gene Location: 95313-95528 bp Feature: domain Description: Relaxase Location: 95319-95520 bp Feature: domain Description: Relaxase Location: 95319-9552 0 bp Feature: gene Location: 96081-97886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96345-97167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96345-97167 bp Feature: domain Description: Intron_maturas2 Location: 97245-97551 bp Feature: domain Description: Intron_maturas2 Location: 972 45-97551 bp Feature: domain Description: HNHc Note: nucleases Location: 97713-97857 bp Feature: domain Description: HNHc Note: nucleases Location: 97713-97857 bp Feature: gene Location: 98079-98960 bp Feature: gene Location: 99065-99262 bp Feature: gene Location: 99332-100162 bp Feature: domain Description: T4SS-DNA_transf Location: 99479-99989 bp Feature: domain Description: T4SS-DNA_transf Location: 99479-99989 bp Feature: gene Location: 100706-102523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100973-101795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100973-101795 bp Feature: domain Description: Intron_maturas2 Location: 101936-102173 bp Feature: domain Description: Intron_maturas2 Location: 101936-102 173 bp Feature: domain Description: HNHc Note: nucleases Location: 102344-102494 bp Feature: domain Description: HNHc Note: nucleases Location: 102 344-102 494 bp Feature: gene Location: 102487-103488 bp Feature: domain Description: TraG-D_C Location: 102865-103198 bp Feature: domain Description: TraG-D_C Location: 102 865-103198 bp Feature: gene Location: 103640-105634 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), TraG-D_C (pfam12696)

Seq: QRPE01000002.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf2, whole genome shotgun sequence (478990 bp)
Overview 1 RT 1: 423655-427034 bp Neighborhood of RT #1 [423655, 427034] RVT-DGRs Feature: gene Location: 423655-424239 bp Feature: gene Location: 424187-424417 bp Feature: gene Location: 424383-425198 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 424716-425040 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 424716-425040 bp Feature: gene Location: 425482-425685 bp Feature: gene Location: 425715-427034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRPE01000003.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf3, whole genome shotgun sequence (311403 bp)
Overview 1 RT 1: 118235-123653 bp Neighborhood of RT #1 [118235, 123661] COG3378 RVT-GII Intron_maturas2 Toprim_2 MobC Feature: gene Location: 118235-119440 bp Feature: domain Description: COG3378 Location: 118604-118913 bp Feature: domain Description: COG3378 Location: 118604 -118913 bp Feature: gene Location: 119698-119880 bp Feature: gene Location: 120428-122236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120692-121514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120692-121514 bp Feature: domain Description: Intron_maturas2 Location: 121583-121892 bp Feature: domain Description: Intron_maturas2 Location: 121583-121892 bp Feature: gene Location: 122208-123119 bp Feature: domain Description: Toprim_2 Location: 122760-123039 bp Feature: domain Description: Toprim_2 Location: 122760-123039 bp Feature: gene Location: 123296-123661 bp Feature: domain Description: MobC Location: 123524-123653 bp Feature: domain Description: MobC Location: 123524 -123653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3378 (Phage- or plasmid-associated DNA primase ), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), MobC (pfam05713)

Seq: QRPE01000047.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf47, whole genome shotgun sequence (28030 bp)
Overview 1 RT 1: 4999-12209 bp Neighborhood of RT #1 [4999, 12209] AAA_21 AAA_21 HNH RVT-UG12 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 4999-7098 bp Feature: domain Description: AAA_21 Location: 5260-5317 bp Feature: domain Description: AAA_21 Location: 5 260-5 317 bp Feature: domain Description: AAA_21 Location: 6538-6817 bp Feature: domain Description: AAA_21 Location: 65 38-6817 bp Feature: gene Location: 7111-8130 bp Feature: domain Description: HNH Note: nucleases Location: 7537-7690 bp Feature: domain Description: HNH Note: nucleases Location: 75 37-7690 bp Feature: gene Location: 8290-10326 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 8725-9214 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 8725 -9214 bp Feature: gene Location: 10495-11718 bp Feature: domain Description: Arm-DNA-bind_5 Location: 10525-10762 bp Feature: domain Description: Arm-DNA-bind_5 Location: 105 25 -10762 bp Feature: domain Description: Phage_int_SAM_5 Location: 10825-11128 bp Feature: domain Description: Phage_int_SAM_5 Location: 10825 -11128 bp Feature: domain Description: INTN1_C_like Location: 11182-11668 bp Feature: domain Description: INTN1_C_like Location: 11182-11668 bp Feature: gene Location: 12018-12209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), HNH (pfam01844), RVT-UG12, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QRPE01000070.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf70, whole genome shotgun sequence (2510 bp)
Overview 1 RT 1: 3-2452 bp Neighborhood of RT #1 [3, 2452] RVT_N RVT-GII GIIM Feature: gene Location: 3-203 bp Feature: gene Location: 259-1908 bp Feature: domain Description: RVT_N Location: 328-571 bp Feature: domain Description: RVT_N Location: 328-571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 16 -126 1 bp Feature: domain Description: GIIM Note: maturase Location: 1312-1546 bp Feature: domain Description: GIIM Note: maturase Location: 1312-1546 bp Feature: gene Location: 2174-2452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRPE01000071.1 Bacteroides intestinalis strain AF36-16BH AF36-16BH.Scaf71, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 118-1588 bp Neighborhood of RT #1 [118, 1920] matK RVT-GII Intron_maturas2 Feature: gene Location: 118-1920 bp Feature: domain Description: matK Location: 187-274 bp Feature: domain Description: matK Location: 187 -27 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Feature: domain Description: Intron_maturas2 Location: 1354-1588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)