myRT

myRT report for GCA_003475265.1_ASM347526v1

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Seq: QRPL01000001.1 Parabacteroides merdae strain AF35-4AC AF35-4AC.Scaf1, whole genome shotgun sequence (520632 bp)
Overview 1 RT 1: 406769-410860 bp Neighborhood of RT #1 [406769, 410889] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 406769-406996 bp Feature: domain Description: DUF4141 Location: 406784-406937 bp Feature: domain Description: DUF41 41 Location: 406784-406937 bp Feature: gene Location: 407036-407197 bp Feature: gene Location: 407517-409352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407811-408633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40781 1 -408633 bp Feature: domain Description: matK Location: 408810-409023 bp Feature: domain Description: matK Location: 40881 0-409023 bp Feature: domain Description: HNHc Note: nucleases Location: 409185-409326 bp Feature: domain Description: HNHc Note: nucleases Location: 4091 85-409326 bp Feature: gene Location: 409345-409881 bp Feature: gene Location: 409885-410889 bp Feature: domain Description: Bac_Flav_CT_J Location: 409891-410860 bp Feature: domain Description: Bac_Flav_CT_J Location: 409891 -41 0860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QRPL01000032.1 Parabacteroides merdae strain AF35-4AC AF35-4AC.Scaf32, whole genome shotgun sequence (26504 bp)
Overview 1 RT 1: 9844-19468 bp Neighborhood of RT #1 [9844, 19470] DDE_Tnp_1_3 COG4646 HELICc matK RVT-GII Intron_maturas2 N6_Mtase COG4646 DUF1896 Feature: gene Location: 9844-10749 bp Feature: domain Description: DDE_Tnp_1_3 Location: 10174-10639 bp Feature: domain Description: DDE_Tnp_1_3 Location: 10174-10639 bp Feature: gene Location: 10805-13741 bp Feature: domain Description: COG4646 Location: 10919-11846 bp Feature: domain Description: COG4646 Location: 10919-11846 bp Feature: domain Description: HELICc Location: 12131-12473 bp Feature: domain Description: HELICc Location: 12 131-12 473 bp Feature: gene Location: 13728-15530 bp Feature: domain Description: matK Location: 13797-13884 bp Feature: domain Description: matK Location: 13797-13884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13992-14814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13992 -14814 bp Feature: domain Description: Intron_maturas2 Location: 14964-15198 bp Feature: domain Description: Intron_maturas2 Location: 14964-15198 bp Feature: gene Location: 16083-19013 bp Feature: domain Description: N6_Mtase Location: 16377-16995 bp Feature: domain Description: N6_Mtase Location: 16377-16995 bp Feature: domain Description: COG4646 Location: 17943-19002 bp Feature: domain Description: COG4646 Location: 17943-19002 bp Feature: gene Location: 19003-19470 bp Feature: domain Description: DUF1896 Location: 19048-19468 bp Feature: domain Description: DUF1896 Location: 19048-19468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), N6_Mtase (pfam02384), DUF1896 (pfam08989)