myRT

myRT report for GCA_003475385.1_ASM347538v1

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Seq: QRQH01000011.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf11, whole genome shotgun sequence (184261 bp)
Overview 1 RT 1: 102681-111638 bp Neighborhood of RT #1 [102681, 111646] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 102681-104870 bp Feature: domain Description: GlnA3 Location: 102756-104868 bp Feature: domain Description: GlnA3 Location: 1 02756-1 04868 bp Feature: gene Location: 105110-107329 bp Feature: gene Location: 107536-108648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107851-108400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 07851 -1 08400 bp Feature: gene Location: 108789-110582 bp Feature: domain Description: rpsA Location: 108867-110475 bp Feature: domain Description: rpsA Location: 1 08867-1 1 0475 bp Feature: gene Location: 110732-111646 bp Feature: domain Description: RNase_Z Location: 110747-111638 bp Feature: domain Description: RNase_Z Location: 1 1 0747-1 1 1 638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: QRQH01000027.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf27, whole genome shotgun sequence (10611 bp)
Overview 1 RT 1: 979-5070 bp Neighborhood of RT #1 [979, 5099] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 979-1206 bp Feature: domain Description: DUF4141 Location: 994-1147 bp Feature: domain Description: DUF4141 Location: 994-1147 bp Feature: gene Location: 1246-1407 bp Feature: gene Location: 1757-3562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2021-2843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 1-2 843 bp Feature: domain Description: matK Location: 3020-3233 bp Feature: domain Description: matK Location: 302 0-32 33 bp Feature: domain Description: HNHc Note: nucleases Location: 3395-3536 bp Feature: domain Description: HNHc Note: nucleases Location: 3395-3536 bp Feature: gene Location: 3555-4091 bp Feature: gene Location: 4095-5099 bp Feature: domain Description: Bac_Flav_CT_J Location: 4101-5070 bp Feature: domain Description: Bac_Flav_CT_J Location: 4101-5070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QRQH01000037.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf37, whole genome shotgun sequence (2422 bp)
Overview 1 RT 1: 123-2209 bp Neighborhood of RT #1 [123, 2209] RVT_N RVT-GII GIIM Feature: gene Location: 123-1823 bp Feature: domain Description: RVT_N Location: 222-465 bp Feature: domain Description: RVT_N Location: 222-465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-1158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-1158 bp Feature: domain Description: GIIM Note: maturase Location: 1209-1443 bp Feature: domain Description: GIIM Note: maturase Location: 1209-1443 bp Feature: gene Location: 2003-2209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRQH01000006.1 Bacteroides fragilis strain AF32-10 AF32-10.Scaf6, whole genome shotgun sequence (374893 bp)
Overview 1 RT 1: 194944-200866 bp Neighborhood of RT #1 [194944, 200982] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 194944-195240 bp Feature: gene Location: 197051-197341 bp Feature: domain Description: Cas2_I_II_III Location: 197078-197288 bp Feature: domain Description: Cas2_I_II_III Location: 197078-197288 bp Feature: gene Location: 197335-199605 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 197542-198148 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 19754 2-19814 8 bp Feature: domain Description: Cas1_I-II-III Location: 198607-199564 bp Feature: domain Description: Cas1_I-II-III Location: 198607-199564 bp Feature: gene Location: 199625-200569 bp Feature: domain Description: Cmr6_III-B Location: 199781-200558 bp Feature: domain Description: Cmr6_III-B Location: 199781-200558 bp Feature: gene Location: 200572-200982 bp Feature: domain Description: Cas_Cmr5 Location: 200620-200866 bp Feature: domain Description: Cas_Cmr5 Location: 200620-200866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)