myRT

myRT report for GCA_003475425.1_ASM347542v1

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Seq: QRQJ01000015.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf15, whole genome shotgun sequence (87928 bp)
Overview 1 RT 1: 36393-38985 bp Neighborhood of RT #1 [36393, 38985] RVT-UG27 Feature: gene Location: 36393-36611 bp Feature: gene Location: 36623-36799 bp Feature: gene Location: 36807-38069 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 36996-37629 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 36996-37629 bp Feature: gene Location: 38447-38620 bp Feature: gene Location: 38773-38985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRQJ01000002.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf2, whole genome shotgun sequence (162969 bp)
Overview 1 RT 1: 142093-146535 bp Neighborhood of RT #1 [142093, 146535] YWFCY RVT_N RVT-GII GIIM VirD4 Feature: gene Location: 142093-143016 bp Feature: domain Description: YWFCY Location: 142099-142276 bp Feature: domain Description: YWFCY Location: 142 099-142 2 76 bp Feature: gene Location: 143354-143488 bp Feature: gene Location: 143654-145306 bp Feature: domain Description: RVT_N Location: 143708-143951 bp Feature: domain Description: RVT_N Location: 143708-143951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143996-144644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143996-144644 bp Feature: domain Description: GIIM Note: maturase Location: 144698-144929 bp Feature: domain Description: GIIM Note: maturase Location: 144698-14492 9 bp Feature: gene Location: 145311-146213 bp Feature: domain Description: VirD4 Location: 145767-146040 bp Feature: domain Description: VirD4 Location: 145767-146040 bp Feature: gene Location: 146236-146535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirD4 (COG3505)

Seq: QRQJ01000020.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf20, whole genome shotgun sequence (75572 bp)
Overview 1 RT 1: 24900-28588 bp Neighborhood of RT #1 [24900, 28611] AAA_14 COG1373 RVT-AbiP2 Hypoth_Ymh Feature: gene Location: 24900-25328 bp Feature: domain Description: AAA_14 Location: 24966-25305 bp Feature: domain Description: AAA_14 Location: 24966-253 05 bp Feature: gene Location: 25355-26155 bp Feature: domain Description: COG1373 Location: 25385-26135 bp Feature: domain Description: COG13 73 Location: 253 85-2613 5 bp Feature: gene Location: 26214-27590 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26643-27099 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 26643 -27099 bp Feature: gene Location: 27493-27792 bp Feature: gene Location: 27817-28611 bp Feature: domain Description: Hypoth_Ymh Location: 28234-28588 bp Feature: domain Description: Hypoth_Ymh Location: 2823 4-28588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_14 (pfam13173), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2, Hypoth_Ymh (pfam09509)

Seq: QRQJ01000029.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf29, whole genome shotgun sequence (61380 bp)
Overview 1 RT 1: 7936-9479 bp Neighborhood of RT #1 [7936, 9479] HTH_28 RVT-GII Feature: gene Location: 7936-8088 bp Feature: gene Location: 8266-8556 bp Feature: domain Description: HTH_28 Location: 8290-8434 bp Feature: domain Description: HTH_28 Location: 8290-84 34 bp Feature: gene Location: 8677-8874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8680-8872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8680-8872 bp Feature: gene Location: 8904-9113 bp Feature: gene Location: 9117-9479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: QRQJ01000003.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf3, whole genome shotgun sequence (161591 bp)
Overview 1 RT 1: 110189-114121 bp Neighborhood of RT #1 [110189, 114121] RVT-UG27 RVT-UG27 Feature: gene Location: 110189-110836 bp Feature: gene Location: 110850-111518 bp Feature: gene Location: 111511-112011 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 111703-112009 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 111703-112009 bp Feature: gene Location: 112068-112772 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 112071-112338 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 112071-112338 bp Feature: gene Location: 113095-113592 bp Feature: gene Location: 113642-114121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QRQJ01000034.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf34, whole genome shotgun sequence (53169 bp)
Overview 1 RT 1: 33423-39212 bp Neighborhood of RT #1 [33423, 39212] DUF1566 RVT-DGRs Feature: gene Location: 33423-35819 bp Feature: gene Location: 35886-36536 bp Feature: gene Location: 36549-38030 bp Feature: domain Description: DUF1566 Location: 36585-36792 bp Feature: domain Description: DUF156 6 Location: 36 585-36 792 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36999-37728 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36 999-37728 bp Feature: gene Location: 38017-38532 bp Feature: gene Location: 38592-39212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs

Seq: QRQJ01000059.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf59, whole genome shotgun sequence (30981 bp)
Overview 1 RT 1: 17652-22567 bp Neighborhood of RT #1 [17652, 23028] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 17652-19481 bp Feature: domain Description: Bac_Flav_CT_G Location: 17655-19467 bp Feature: domain Description: Bac_Flav_CT_G Location: 17 655-19467 bp Feature: gene Location: 19509-19682 bp Feature: gene Location: 20028-21839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20292-21114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20292-21114 bp Feature: domain Description: Intron_maturas2 Location: 21273-21504 bp Feature: domain Description: Intron_maturas2 Location: 2127 3-21504 bp Feature: domain Description: HNHc Note: nucleases Location: 21660-21810 bp Feature: domain Description: HNHc Note: nucleases Location: 21660-21810 bp Feature: gene Location: 21917-22375 bp Feature: domain Description: Bac_Flav_CT_G Location: 21935-22361 bp Feature: domain Description: Bac_Flav_CT_G Location: 21935-22361 bp Feature: gene Location: 22396-23028 bp Feature: domain Description: DUF4141 Location: 22420-22567 bp Feature: domain Description: DUF4141 Location: 22420-22567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QRQJ01000072.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf72, whole genome shotgun sequence (23693 bp)
Overview 1 RT 1: 106-4953 bp Neighborhood of RT #1 [106, 6749] RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 106-327 bp Feature: gene Location: 327-1451 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 603-1194 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 603-1194 bp Feature: gene Location: 1596-1763 bp Feature: gene Location: 1824-6749 bp Feature: domain Description: Laminin_G_3 Location: 2397-2778 bp Feature: domain Description: Laminin_G_3 Location: 2397-2778 bp Feature: domain Description: pfam08757 Location: 3573-3897 bp Feature: domain Description: pfam08 757 Location: 3573-38 97 bp Feature: domain Description: LRR_AMN1 Location: 4509-4953 bp Feature: domain Description: LRR_AMN1 Location: 4509-4953 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: QRQJ01000009.1 Bacteroides caccae strain AF31-29AC AF31-29AC.Scaf9, whole genome shotgun sequence (112537 bp)
Overview 1 RT 1: 66506-71694 bp Neighborhood of RT #1 [66506, 71708] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 66506-66820 bp Feature: domain Description: DUF3876 Location: 66560-66809 bp Feature: domain Description: DUF3876 Location: 66560-66809 bp Feature: gene Location: 66835-68541 bp Feature: domain Description: Bac_Flav_CT_G Location: 66967-68533 bp Feature: domain Description: Bac_Flav_CT_G Location: 669 67-68533 bp Feature: gene Location: 68903-70186 bp Feature: domain Description: RVT_N Location: 68957-69200 bp Feature: domain Description: RVT_N Location: 689 57-69 200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69245-69893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69 245-69 89 3 bp Feature: domain Description: GIIM Note: maturase Location: 69947-70097 bp Feature: domain Description: GIIM Note: maturase Location: 69 9 47-7009 7 bp Feature: gene Location: 70268-70648 bp Feature: gene Location: 70770-71708 bp Feature: domain Description: Bac_Flav_CT_G Location: 70773-71694 bp Feature: domain Description: Bac_Flav_CT_G Location: 70773-7169 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)