myRT

myRT report for GCA_003475505.1_ASM347550v1

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Seq: QRQM01000046.1 Bacteroides intestinalis strain AF31-23 AF31-23.Scaf46, whole genome shotgun sequence (16803 bp)
Overview 1 RT 1: 13004-16781 bp Neighborhood of RT #1 [13004, 16798] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 13004-13942 bp Feature: domain Description: Bac_Flav_CT_G Location: 13007-13928 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 3007-1 3928 bp Feature: gene Location: 14121-14270 bp Feature: gene Location: 14526-16187 bp Feature: domain Description: RVT_N Location: 14580-14823 bp Feature: domain Description: RVT_N Location: 1 4580-1 4823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14868-15516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4868-1 551 6 bp Feature: domain Description: GIIM Note: maturase Location: 15570-15801 bp Feature: domain Description: GIIM Note: maturase Location: 1 5570-1 5801 bp Feature: gene Location: 16184-16798 bp Feature: domain Description: Bac_Flav_CT_G Location: 16304-16781 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 6304-1 6781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRQM01000005.1 Bacteroides intestinalis strain AF31-23 AF31-23.Scaf5, whole genome shotgun sequence (234606 bp)
Overview 1 RT 1: 155121-157151 bp Neighborhood of RT #1 [155121, 157151] RVT-DGRs Feature: gene Location: 155121-155324 bp Feature: gene Location: 155364-155546 bp Feature: gene Location: 155608-156423 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 155941-156265 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 155941-1562 65 bp Feature: gene Location: 156389-156619 bp Feature: gene Location: 156567-157151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QRQM01000060.1 Bacteroides intestinalis strain AF31-23 AF31-23.Scaf60, whole genome shotgun sequence (3289 bp)
Overview 1 RT 1: 267-3211 bp Neighborhood of RT #1 [267, 3213] TraO DUF3872 RVT-AbiP2 DUF3873 Feature: gene Location: 267-845 bp Feature: domain Description: TraO Location: 345-843 bp Feature: domain Description: TraO Location: 3 45-843 bp Feature: gene Location: 864-1307 bp Feature: domain Description: DUF3872 Location: 894-1287 bp Feature: domain Description: DUF3 872 Location: 894-1287 bp Feature: gene Location: 1365-2963 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1887-2343 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1887-23 43 bp Feature: gene Location: 3007-3213 bp Feature: domain Description: DUF3873 Location: 3013-3211 bp Feature: domain Description: DUF3 873 Location: 3 013 -3 211 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), DUF3872 (pfam12988), RVT-AbiP2, DUF3873 (pfam12989)

Seq: QRQM01000066.1 Bacteroides intestinalis strain AF31-23 AF31-23.Scaf66, whole genome shotgun sequence (2556 bp)
Overview 1 RT 1: 129-2166 bp Neighborhood of RT #1 [129, 2444] RVT-GII Intron_maturas2 Feature: gene Location: 129-626 bp Feature: gene Location: 639-2444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903-1722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903-1722 bp Feature: domain Description: Intron_maturas2 Location: 1836-2166 bp Feature: domain Description: Intron_maturas2 Location: 1836-2166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRQM01000068.1 Bacteroides intestinalis strain AF31-23 AF31-23.Scaf68, whole genome shotgun sequence (2330 bp)
Overview 1 RT 1: 43-1327 bp Neighborhood of RT #1 [43, 1722] RVT_N RVT-GII GIIM Feature: gene Location: 43-1722 bp Feature: domain Description: RVT_N Location: 100-343 bp Feature: domain Description: RVT_N Location: 100-343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 388-1042 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1327 bp Feature: domain Description: GIIM Note: maturase Location: 1093-1327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QRQM01000008.1 Bacteroides intestinalis strain AF31-23 AF31-23.Scaf8, whole genome shotgun sequence (221079 bp)
Overview 1 RT 1: 211852-219999 bp Neighborhood of RT #1 [211852, 219999] DUF2971 RVT-UG3 RVT-UG8 Feature: gene Location: 211852-212697 bp Feature: domain Description: DUF2971 Location: 212236-212440 bp Feature: domain Description: DUF2971 Location: 212236 -212440 bp Feature: gene Location: 213114-214028 bp Feature: gene Location: 214443-215906 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 214893-215406 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 214893-215406 bp Feature: gene Location: 215893-218085 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 216508-216958 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 216 508-216 958 bp Feature: gene Location: 218616-218804 bp Feature: gene Location: 219088-219999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2971 (pfam11185), RVT-UG3, RVT-UG8