myRT

myRT report for GCA_003475745.1_ASM347574v1

Download annotations/find similar RTs

Seq: QRPZ01000010.1 Bacteroides fragilis strain AF33-30 AF33-30.Scaf10, whole genome shotgun sequence (99239 bp)
Overview 1 RT 1: 52633-58994 bp Neighborhood of RT #1 [52633, 59023] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C RteC Feature: gene Location: 52633-53880 bp Feature: domain Description: Relaxase Location: 52687-53188 bp Feature: domain Description: Relaxase Location: 52687-531 88 bp Feature: gene Location: 53911-54837 bp Feature: domain Description: YWFCY Location: 53920-54097 bp Feature: domain Description: YWFCY Location: 53920-54097 bp Feature: gene Location: 55475-57127 bp Feature: RT Description: RVT_N Location: 55529-55772 bp Feature: RT Description: RVT_N Location: 55529-55772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55817-56465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5581 7-56465 bp Feature: domain Description: GIIM Note: maturase Location: 56519-56750 bp Feature: domain Description: GIIM Note: maturase Location: 5651 9-56750 bp Feature: gene Location: 57048-58337 bp Feature: domain Description: TraG-D_C Location: 57714-58044 bp Feature: domain Description: TraG-D_C Location: 5771 4-58044 bp Feature: gene Location: 58418-59023 bp Feature: domain Description: RteC Location: 58721-58994 bp Feature: domain Description: RteC Location: 58721 -58994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), RteC (pfam09357)

Seq: QRPZ01000012.1 Bacteroides fragilis strain AF33-30 AF33-30.Scaf12, whole genome shotgun sequence (96158 bp)
Overview 1 RT 1: 47672-49688 bp Neighborhood of RT #1 [47672, 49688] RVT-GII HTH_28 Feature: gene Location: 47672-48034 bp Feature: gene Location: 48038-48247 bp Feature: gene Location: 48277-48474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48280-48472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482 80-48472 bp Feature: gene Location: 48595-48885 bp Feature: domain Description: HTH_28 Location: 48619-48766 bp Feature: domain Description: HTH_2 8 Location: 48619-48766 bp Feature: gene Location: 49314-49688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QRPZ01000004.1 Bacteroides fragilis strain AF33-30 AF33-30.Scaf4, whole genome shotgun sequence (140336 bp)
Overview 1 RT 1: 59866-67295 bp Neighborhood of RT #1 [59866, 67300] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 59866-60639 bp Feature: domain Description: RNase_Z Location: 59881-60586 bp Feature: domain Description: RNase_Z Location: 59881-60586 bp Feature: gene Location: 60789-62582 bp Feature: domain Description: rpsA Location: 60867-62475 bp Feature: domain Description: rpsA Location: 60867-62475 bp Feature: gene Location: 62724-63836 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63039-63588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 63 03 9-63 588 bp Feature: gene Location: 64043-66262 bp Feature: gene Location: 66503-67300 bp Feature: domain Description: GlnA3 Location: 66575-67295 bp Feature: domain Description: GlnA3 Location: 66575-67295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: QRPZ01000006.1 Bacteroides fragilis strain AF33-30 AF33-30.Scaf6, whole genome shotgun sequence (133079 bp)
Overview 1 RT 1: 8234-11194 bp Neighborhood of RT #1 [8234, 11445] Avd_like RVT-DGRs YbdN Feature: gene Location: 8234-8605 bp Feature: domain Description: Avd_like Location: 8261-8564 bp Feature: domain Description: Avd_like Location: 8261-8564 bp Feature: gene Location: 8738-8950 bp Feature: gene Location: 9203-10387 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9284-9998 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9284 -9998 bp Feature: gene Location: 10411-10857 bp Feature: gene Location: 10879-11445 bp Feature: domain Description: YbdN Location: 10885-11194 bp Feature: domain Description: YbdN Location: 10885-11194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbdN (COG3969), Avd_like (cd16376), RVT-DGRs