myRT

myRT report for GCA_003475805.1_ASM347580v1

Download annotations/find similar RTs

Seq: QRQF01000011.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf11, whole genome shotgun sequence (156461 bp)
Overview 1 RT 1: 73249-84423 bp Neighborhood of RT #1 [73249, 84431] PrgI RVT-GII HNHc TraC-F-type Spr RVT-GII Intron_maturas2 DUF4315 Feature: gene Location: 73249-73671 bp Feature: domain Description: PrgI Location: 73297-73570 bp Feature: domain Description: PrgI Location: 73297-73570 bp Feature: gene Location: 73625-74590 bp Feature: gene Location: 75313-77286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75649-76387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75649-76387 bp Feature: domain Description: HNHc Note: nucleases Location: 76942-77080 bp Feature: domain Description: HNHc Note: nucleases Location: 76942-77080 bp Feature: gene Location: 77377-78819 bp Feature: domain Description: TraC-F-type Location: 77395-78616 bp Feature: domain Description: TraC-F-type Location: 77395-7861 6 bp Feature: gene Location: 78800-79609 bp Feature: gene Location: 80117-81511 bp Feature: domain Description: Spr Location: 81188-81479 bp Feature: domain Description: Spr Location: 81 1 88-81 479 bp Feature: gene Location: 81684-81872 bp Feature: gene Location: 82137-83933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82404-83217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82404-8321 7 bp Feature: domain Description: Intron_maturas2 Location: 83295-83715 bp Feature: domain Description: Intron_maturas2 Location: 83295-8371 5 bp Feature: gene Location: 83945-84175 bp Feature: gene Location: 84162-84431 bp Feature: domain Description: DUF4315 Location: 84171-84423 bp Feature: domain Description: DUF431 5 Location: 841 71 -84423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), Spr (COG0791), Intron_maturas2 (pfam01348), DUF4315 (pfam14193)

Seq: QRQF01000014.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf14, whole genome shotgun sequence (139655 bp)
Overview 1 RT 1: 85673-94358 bp 2 RT 2: 129637-133854 bp Neighborhood of RT #1 [85673, 95062] SIR2 Piwi_piwi-like_ProArk RVT-Retrons Trypsin_2 KAP_NTPase Neighborhood of RT #2 [129637, 133901] DDE_Tnp_IS66 RVT-Retrons RVT-Retrons YhcG_C Feature: gene Location: 85673-87079 bp Feature: gene Location: 87196-90336 bp Feature: domain Description: SIR2 Location: 87265-87763 bp Feature: domain Description: SIR2 Location: 872 65-87763 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 89026-90283 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 8902 6-902 83 bp Feature: gene Location: 90543-92207 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90693-91284 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90693-912 84 bp Feature: domain Description: Trypsin_2 Location: 91701-92112 bp Feature: domain Description: Trypsin_2 Location: 91701-92 112 bp Feature: gene Location: 92472-92831 bp Feature: gene Location: 93047-95062 bp Feature: domain Description: KAP_NTPase Location: 93215-94358 bp Feature: domain Description: KAP_NTPase Location: 932 15-94358 bp Feature: gene Location: 129637-131178 bp Feature: domain Description: DDE_Tnp_IS66 Location: 130279-131080 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1302 79-131080 bp Feature: gene Location: 131524-132492 bp Feature: gene Location: 132492-132821 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132591-132741 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132 591-132 741 bp Feature: gene Location: 132893-133399 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132902-133169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132 902 -133169 bp Feature: gene Location: 133402-133533 bp Feature: gene Location: 133707-133901 bp Feature: domain Description: YhcG_C Location: 133743-133854 bp Feature: domain Description: YhcG_C Location: 133743-133854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), RVT-Retrons, Trypsin_2 (pfam13365), KAP_NTPase (pfam07693), DDE_Tnp_IS66 (pfam03050), YhcG_C

Seq: QRQF01000024.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf24, whole genome shotgun sequence (101435 bp)
Overview 1 RT 1: 10037-15038 bp Neighborhood of RT #1 [10037, 15064] DUF2871 RVT-Retrons PRK14806 PRK06545 Feature: gene Location: 10037-10720 bp Feature: gene Location: 10722-11165 bp Feature: domain Description: DUF2871 Location: 10758-11148 bp Feature: domain Description: DUF2871 Location: 10758-11148 bp Feature: gene Location: 11509-12519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11674-12229 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11674-12229 bp Feature: gene Location: 12665-13942 bp Feature: domain Description: PRK14806 Location: 12677-13919 bp Feature: domain Description: PRK14806 Location: 12677-13 919 bp Feature: gene Location: 13967-15064 bp Feature: domain Description: PRK06545 Location: 13982-15038 bp Feature: domain Description: PRK06545 Location: 13 982-1503 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2871 (pfam11070), RVT-Retrons, PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), PRK06545 (prephenate dehydrogenase; Validated)

Seq: QRQF01000005.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf5, whole genome shotgun sequence (331444 bp)
Overview 1 RT 1: 302444-313695 bp 2 RT 2: 321466-327378 bp Neighborhood of RT #1 [302444, 313886] ParB_N_like RVT-GII HNHc COG4646 KOG1000 DUF3991 Toprim_2 Neighborhood of RT #2 [321466, 327410] VirD4 RVT-GII HNHc SpoVG Feature: gene Location: 302444-303553 bp Feature: domain Description: ParB_N_like Location: 302594-302840 bp Feature: domain Description: ParB_N_like Location: 302594 -30284 0 bp Feature: gene Location: 303537-305876 bp Feature: gene Location: 306555-308426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306876-307611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 306876-307611 bp Feature: domain Description: HNHc Note: nucleases Location: 308166-308307 bp Feature: domain Description: HNHc Note: nucleases Location: 308166-308307 bp Feature: gene Location: 308696-312865 bp Feature: domain Description: COG4646 Location: 308861-311555 bp Feature: domain Description: COG4 64 6 Location: 308861-311555 bp Feature: domain Description: KOG1000 Location: 311825-312125 bp Feature: domain Description: KOG1000 Location: 311825-312125 bp Feature: gene Location: 312876-313886 bp Feature: domain Description: DUF3991 Location: 313257-313470 bp Feature: domain Description: DUF3991 Location: 313257-3134 70 bp Feature: domain Description: Toprim_2 Location: 313515-313695 bp Feature: domain Description: Toprim_2 Location: 313515-313695 bp Feature: gene Location: 321466-323718 bp Feature: domain Description: VirD4 Location: 322195-323434 bp Feature: domain Description: VirD4 Location: 322195-3234 34 bp Feature: gene Location: 323690-323974 bp Feature: gene Location: 324729-326600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 325044-325770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32504 4 -325770 bp Feature: domain Description: HNHc Note: nucleases Location: 326322-326490 bp Feature: domain Description: HNHc Note: nucleases Location: 326322-3264 90 bp Feature: gene Location: 326861-327112 bp Feature: gene Location: 327126-327410 bp Feature: domain Description: SpoVG Location: 327153-327378 bp Feature: domain Description: SpoVG Location: 327153-327378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like (cd16411), RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3991 (pfam13154), Toprim_2 (pfam13155), VirD4 (COG3505), SpoVG (pfam04026)

Seq: QRQF01000006.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf6, whole genome shotgun sequence (301267 bp)
Overview 1 RT 1: 283426-289753 bp Neighborhood of RT #1 [283426, 289758] AAA-ATPase_like PDDEXK_9 LacZ RVT-GII UgpE Feature: gene Location: 283426-285060 bp Feature: domain Description: AAA-ATPase_like Location: 283498-284308 bp Feature: domain Description: AAA-ATPase_like Location: 283498-284308 bp Feature: domain Description: PDDEXK_9 Location: 284767-284959 bp Feature: domain Description: PDDEXK_9 Location: 284767-28495 9 bp Feature: gene Location: 285199-287073 bp Feature: domain Description: LacZ Location: 285277-286462 bp Feature: domain Description: LacZ Location: 285 277-286462 bp Feature: gene Location: 287202-288500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287457-288147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28745 7-288147 bp Feature: gene Location: 288527-288670 bp Feature: gene Location: 288988-289758 bp Feature: domain Description: UgpE Location: 288994-289753 bp Feature: domain Description: UgpE Location: 288994-28975 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011), LacZ (COG3250), RVT-GII, UgpE (COG0395)

Seq: QRQF01000068.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf68, whole genome shotgun sequence (12251 bp)
Overview 1 RT 1: 7529-11794 bp Neighborhood of RT #1 [7529, 11826] IMPase RVT-GII GIIM sigma70-ECF HTH_16 Feature: gene Location: 7529-8296 bp Feature: domain Description: IMPase Location: 7592-8249 bp Feature: domain Description: IMPase Location: 7592-8249 bp Feature: gene Location: 9207-9344 bp Feature: gene Location: 9700-11004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9901-10519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9901-10519 bp Feature: domain Description: GIIM Note: maturase Location: 10573-10786 bp Feature: domain Description: GIIM Note: maturase Location: 10573-10786 bp Feature: gene Location: 11190-11630 bp Feature: domain Description: sigma70-ECF Location: 11214-11604 bp Feature: domain Description: sigma70-ECF Location: 11214-116 04 bp Feature: gene Location: 11620-11826 bp Feature: domain Description: HTH_16 Location: 11635-11794 bp Feature: domain Description: HTH_16 Location: 116 35-11794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sigma70-ECF (TIGR02937), HTH_16 (pfam12645), IMPase (cd01639), RVT-GII, GIIM (pfam08388)

Seq: QRQF01000008.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf8, whole genome shotgun sequence (193222 bp)
Overview 1 RT 1: 169401-174884 bp Neighborhood of RT #1 [169401, 174884] pilus_cpaB PulO RVT-GII Intron_maturas2 Feature: gene Location: 169401-170174 bp Feature: domain Description: pilus_cpaB Location: 169437-170106 bp Feature: domain Description: pilus_cpaB Location: 169437 -17 0106 bp Feature: gene Location: 170191-170580 bp Feature: domain Description: PulO Location: 170233-170560 bp Feature: domain Description: PulO Location: 17 0233-17 0560 bp Feature: gene Location: 170791-172617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171064-171895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 1064-17 1895 bp Feature: domain Description: Intron_maturas2 Location: 171967-172273 bp Feature: domain Description: Intron_maturas2 Location: 17 1967 -17 227 3 bp Feature: gene Location: 172666-172860 bp Feature: gene Location: 173148-174884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pilus_cpaB (TIGR03177), PulO (COG1989), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QRQF01000089.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf89, whole genome shotgun sequence (2676 bp)
Overview 1 RT 1: 96-2659 bp Neighborhood of RT #1 [96, 2659] RVT-GII HNHc Feature: gene Location: 96-1922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1110 bp Feature: domain Description: HNHc Note: nucleases Location: 1659-1800 bp Feature: domain Description: HNHc Note: nucleases Location: 1659-18 00 bp Feature: gene Location: 2507-2659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QRQF01000091.1 Hungatella hathewayi strain AF33-11 AF33-11.Scaf91, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 1-1910 bp Neighborhood of RT #1 [1, 1910] RVT_N RVT-GII GIIM Feature: gene Location: 1-141 bp Feature: gene Location: 251-1774 bp Feature: RT Description: RVT_N Location: 305-548 bp Feature: RT Description: RVT_N Location: 305-548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605-1265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605-1265 bp Feature: domain Description: GIIM Note: maturase Location: 1328-1562 bp Feature: domain Description: GIIM Note: maturase Location: 1328-1562 bp Feature: gene Location: 1767-1910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)