myRT

myRT report for GCA_003475825.1_ASM347582v1

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Seq: QRQP01000011.1 Parabacteroides merdae strain AF31-17 AF31-17.Scaf11, whole genome shotgun sequence (170398 bp)
Overview 1 RT 1: 40983-47274 bp Neighborhood of RT #1 [40983, 47274] dnaG RVT-UG24 Feature: gene Location: 40983-42023 bp Feature: domain Description: dnaG Location: 41067-42009 bp Feature: domain Description: dnaG Location: 41 067-42009 bp Feature: gene Location: 42029-42706 bp Feature: gene Location: 42726-46151 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 43239-43707 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 43239-43707 bp Feature: gene Location: 46284-46559 bp Feature: gene Location: 46657-47274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24

Seq: QRQP01000023.1 Parabacteroides merdae strain AF31-17 AF31-17.Scaf23, whole genome shotgun sequence (77035 bp)
Overview 1 RT 1: 49240-54432 bp Neighborhood of RT #1 [49240, 54443] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 49240-50178 bp Feature: domain Description: Bac_Flav_CT_G Location: 49243-50164 bp Feature: domain Description: Bac_Flav_CT_G Location: 492 43-50164 bp Feature: gene Location: 50357-50506 bp Feature: gene Location: 50762-52423 bp Feature: domain Description: RVT_N Location: 50816-51059 bp Feature: domain Description: RVT_N Location: 50816-51059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51104-51752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51104-51752 bp Feature: domain Description: GIIM Note: maturase Location: 51806-52037 bp Feature: domain Description: GIIM Note: maturase Location: 51806-52 037 bp Feature: gene Location: 52420-54114 bp Feature: domain Description: Bac_Flav_CT_G Location: 52540-54106 bp Feature: domain Description: Bac_Flav_CT_G Location: 52 540-54106 bp Feature: gene Location: 54129-54443 bp Feature: domain Description: DUF3876 Location: 54183-54432 bp Feature: domain Description: DUF3876 Location: 54183-54432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QRQP01000032.1 Parabacteroides merdae strain AF31-17 AF31-17.Scaf32, whole genome shotgun sequence (38479 bp)
Overview 1 RT 1: 2-11283 bp Neighborhood of RT #1 [2, 11351] DUF1896 N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 Feature: gene Location: 2-418 bp Feature: domain Description: DUF1896 Location: 5-416 bp Feature: domain Description: DUF1896 Location: 5-416 bp Feature: gene Location: 689-3661 bp Feature: domain Description: N6_Mtase Location: 782-890 bp Feature: domain Description: N6_Mtase Location: 782-890 bp Feature: domain Description: N6_Mtase Location: 1028-1385 bp Feature: domain Description: N6_Mtase Location: 1028-13 85 bp Feature: domain Description: COG4646 Location: 2714-3650 bp Feature: domain Description: COG4646 Location: 2714-3 650 bp Feature: gene Location: 4214-6016 bp Feature: domain Description: matK Location: 4283-4370 bp Feature: domain Description: matK Location: 4283 -43 70 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4478-5300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4478-53 00 bp Feature: domain Description: Intron_maturas2 Location: 5450-5684 bp Feature: domain Description: Intron_maturas2 Location: 5450-5684 bp Feature: gene Location: 6003-8768 bp Feature: domain Description: COG4646 Location: 6117-7257 bp Feature: domain Description: COG4646 Location: 6117-7257 bp Feature: domain Description: Helicase_C Location: 7470-7668 bp Feature: domain Description: Helicase_C Location: 7470-7668 bp Feature: gene Location: 9426-11351 bp Feature: domain Description: PRK13351 Location: 9429-11283 bp Feature: domain Description: PRK13 3 51 Location: 9429-11283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein)

Seq: QRQP01000055.1 Parabacteroides merdae strain AF31-17 AF31-17.Scaf55, whole genome shotgun sequence (2423 bp)
Overview 1 RT 1: 1-2382 bp Neighborhood of RT #1 [1, 2382] RVT_N RVT-GII GIIM Feature: gene Location: 1-129 bp Feature: gene Location: 132-1787 bp Feature: domain Description: RVT_N Location: 189-426 bp Feature: domain Description: RVT_N Location: 189-4 26 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 77-1125 bp Feature: domain Description: GIIM Note: maturase Location: 1182-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1182-14 13 bp Feature: gene Location: 1869-2045 bp Feature: gene Location: 2089-2382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)