myRT

myRT report for GCA_003477585.1_ASM347758v1

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Seq: QUDM01000163.1 Ruminococcus sp. AF42-9BH AF42-9BH.Scaf163, whole genome shotgun sequence (4255 bp)
Overview 1 RT 1: 1-1752 bp Neighborhood of RT #1 [1, 1835] RVT-UNC SnoaL_2 nicotinamidase_related Feature: gene Location: 1-891 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 448-886 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 448-886 bp Feature: gene Location: 938-1303 bp Feature: domain Description: SnoaL_2 Location: 953-1250 bp Feature: domain Description: SnoaL_2 Location: 953-1 250 bp Feature: gene Location: 1311-1835 bp Feature: domain Description: nicotinamidase_related Location: 1317-1752 bp Feature: domain Description: nicotinamidase_related Location: 1 31 7-1 752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8/RVT-UG12/RVT-UG15/RVT-UG14(RVT-UNC), SnoaL_2 (pfam12680), nicotinamidase_related (cd01014)

Seq: QUDM01000180.1 Ruminococcus sp. AF42-9BH AF42-9BH.Scaf180, whole genome shotgun sequence (3211 bp)
Overview 1 RT 1: 2-3208 bp Neighborhood of RT #1 [2, 3208] YodL LPD18 DUF4316 RVT-GII GIIM Feature: gene Location: 2-781 bp Feature: domain Description: YodL Location: 5-242 bp Feature: domain Description: YodL Location: 5-2 42 bp Feature: domain Description: LPD18 Location: 272-512 bp Feature: domain Description: LPD18 Location: 2 72 -512 bp Feature: domain Description: DUF4316 Location: 566-695 bp Feature: domain Description: DUF4316 Location: 566-695 bp Feature: gene Location: 1064-1264 bp Feature: gene Location: 1356-2645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1647-2 2 80 bp Feature: domain Description: GIIM Note: maturase Location: 2361-2586 bp Feature: domain Description: GIIM Note: maturase Location: 2 361-2 586 bp Feature: gene Location: 2897-3208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD18 (pfam18832), DUF4316 (pfam14195), RVT-GII, GIIM (pfam08388)

Seq: QUDM01000263.1 Ruminococcus sp. AF42-9BH AF42-9BH.Scaf263, whole genome shotgun sequence (987 bp)
Overview 1 RT 1: 113-941 bp Neighborhood of RT #1 [113, 985] RVT-GII Feature: gene Location: 113-985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 26-941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUDM01000264.1 Ruminococcus sp. AF42-9BH AF42-9BH.Scaf264, whole genome shotgun sequence (987 bp)
Overview 1 RT 1: 113-941 bp Neighborhood of RT #1 [113, 985] RVT-GII Feature: gene Location: 113-985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 326-94 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QUDM01000067.1 Ruminococcus sp. AF42-9BH AF42-9BH.Scaf67, whole genome shotgun sequence (23068 bp)
Overview 1 RT 1: 13595-17397 bp Neighborhood of RT #1 [13595, 17397] COG3666 DDE_Tnp_1 DDE_Tnp_1_6 RVT-GII GIIM Feature: gene Location: 13595-14857 bp Feature: domain Description: COG3666 Location: 13622-14093 bp Feature: domain Description: COG3666 Location: 13622-14093 bp Feature: domain Description: DDE_Tnp_1 Location: 14408-14768 bp Feature: domain Description: DDE_Tnp_1 Location: 14408-14768 bp Feature: gene Location: 14943-15173 bp Feature: domain Description: DDE_Tnp_1_6 Location: 14949-15141 bp Feature: domain Description: DDE_Tnp_1_6 Location: 14949-15 141 bp Feature: gene Location: 15320-16312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15326-15860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 326-15 860 bp Feature: domain Description: GIIM Note: maturase Location: 15917-16133 bp Feature: domain Description: GIIM Note: maturase Location: 15 917-16133 bp Feature: gene Location: 16500-16967 bp Feature: gene Location: 17227-17397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_6 (pfam13751), RVT-GII, GIIM (pfam08388)