myRT

myRT report for GCA_003477775.1_ASM347777v1

Download annotations/find similar RTs

Seq: QUDQ01000003.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf3, whole genome shotgun sequence (197631 bp)
Overview 1 RT 1: 150914-153627 bp Neighborhood of RT #1 [150914, 153659] Transposase_20 DEDD_Tnp_IS110 RVT_N RVT-GII DEDD_Tnp_IS110 Feature: gene Location: 150914-151297 bp Feature: domain Description: Transposase_20 Location: 150917-151118 bp Feature: domain Description: Transposase_20 Location: 1 5091 7-1 51 1 1 8 bp Feature: gene Location: 151370-151936 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 151379-151640 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 51 379-1 51 640 bp Feature: gene Location: 152059-152904 bp Feature: RT Description: RVT_N Location: 152125-152368 bp Feature: RT Description: RVT_N Location: 1 521 25-1 52368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152413-152842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5241 3-1 52842 bp Feature: gene Location: 153152-153382 bp Feature: gene Location: 153417-153659 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 153432-153627 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 53432-1 53627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_20 (pfam02371), DEDD_Tnp_IS110 (pfam01548), RVT_N (pfam13655), RVT-GII

Seq: QUDQ01000030.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf30, whole genome shotgun sequence (33321 bp)
Overview 1 RT 1: 3282-7408 bp Neighborhood of RT #1 [3282, 7431] FlgJ PGRP SH3_3 Phage_holin_4_1 RVT-DGRs Avd_like Feature: gene Location: 3282-5090 bp Feature: domain Description: FlgJ Location: 3291-3798 bp Feature: domain Description: FlgJ Location: 32 91-3798 bp Feature: domain Description: PGRP Location: 3879-4284 bp Feature: domain Description: PGRP Location: 3879-42 84 bp Feature: domain Description: SH3_3 Location: 4488-4632 bp Feature: domain Description: SH3_3 Location: 4488-4632 bp Feature: gene Location: 5087-5575 bp Feature: domain Description: Phage_holin_4_1 Location: 5126-5483 bp Feature: domain Description: Phage_holin_4_1 Location: 512 6-5483 bp Feature: gene Location: 5640-6674 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5850-6465 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5850-6465 bp Feature: gene Location: 6610-6915 bp Feature: gene Location: 7018-7431 bp Feature: domain Description: Avd_like Location: 7105-7408 bp Feature: domain Description: Avd_like Location: 7105-7408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FlgJ (COG1705), PGRP (smart00701), SH3_3 (pfam08239), Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376)

Seq: QUDQ01000007.1 Clostridium sp. AF37-5AT AF37-5AT.Scaf7, whole genome shotgun sequence (151226 bp)
Overview 1 RT 1: 76093-83161 bp Neighborhood of RT #1 [76093, 83247] TrmL CysI RVT-GII GIIM RocR MmsB Feature: gene Location: 76093-76587 bp Feature: domain Description: TrmL Location: 76096-76543 bp Feature: domain Description: TrmL Location: 76096-76543 bp Feature: gene Location: 76593-78212 bp Feature: domain Description: CysI Location: 76716-78048 bp Feature: domain Description: CysI Location: 76716-78048 bp Feature: gene Location: 78791-80074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79001-79616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79001-79616 bp Feature: domain Description: GIIM Note: maturase Location: 79676-79904 bp Feature: domain Description: GIIM Note: maturase Location: 79676-79904 bp Feature: gene Location: 80240-82162 bp Feature: domain Description: RocR Location: 80786-82157 bp Feature: domain Description: RocR Location: 80786-82157 bp Feature: gene Location: 82360-83247 bp Feature: domain Description: MmsB Location: 82372-83161 bp Feature: domain Description: MmsB Location: 823 72-83 161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrmL (COG0219), CysI (TIGR02041), RVT-GII, GIIM (pfam08388), RocR (COG3829), MmsB (COG2084)