myRT

myRT report for GCA_003477925.1_ASM347792v1

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Seq: QUEG01000001.1 Clostridium sp. AF32-7AC AF32-7AC.Scaf1, whole genome shotgun sequence (925378 bp)
Overview 1 RT 1: 159637-164656 bp Neighborhood of RT #1 [159637, 164715] MATE_MepA_like RVT-GII HTH_XRE DNA_ligase_A_N HTH_DeoR Feature: gene Location: 159637-160938 bp Feature: domain Description: MATE_MepA_like Location: 159649-160906 bp Feature: domain Description: MATE_MepA_like Location: 1 59649-1 60906 bp Feature: gene Location: 161094-161339 bp Feature: gene Location: 161429-162724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161684-162374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 684-1 62374 bp Feature: gene Location: 162899-163705 bp Feature: domain Description: HTH_XRE Location: 162926-163097 bp Feature: domain Description: HTH_XRE Location: 1 62926-1 63097 bp Feature: domain Description: DNA_ligase_A_N Location: 163430-163676 bp Feature: domain Description: DNA_ligase_A_N Location: 1 63430-1 63676 bp Feature: gene Location: 164374-164715 bp Feature: domain Description: HTH_DeoR Location: 164554-164656 bp Feature: domain Description: HTH_DeoR Location: 1 64554-1 64656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_MepA_like (cd13143), RVT-GII, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), HTH_DeoR (pfam08220)

Seq: QUEG01000004.1 Clostridium sp. AF32-7AC AF32-7AC.Scaf4, whole genome shotgun sequence (287843 bp)
Overview 1 RT 1: 255749-259363 bp Neighborhood of RT #1 [255749, 259365] Phage_holin_4_1 RVT-DGRs Avd_like PHA00653 Feature: gene Location: 255749-256237 bp Feature: domain Description: Phage_holin_4_1 Location: 255788-256148 bp Feature: domain Description: Phage_holin_4_1 Location: 2 55788-2 56148 bp Feature: gene Location: 256234-256413 bp Feature: gene Location: 256438-257499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 256675-257296 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 56675-2 572 96 bp Feature: gene Location: 257826-258182 bp Feature: domain Description: Avd_like Location: 257856-258162 bp Feature: domain Description: Avd_like Location: 2 57856-2 58162 bp Feature: gene Location: 258223-259365 bp Feature: domain Description: PHA00653 Location: 258346-259363 bp Feature: domain Description: PHA00653 Location: 2 58346-2 59363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)