myRT

myRT report for GCA_003478065.1_ASM347806v1

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Seq: QUEQ01000010.1 Ruminococcus sp. OF02-6 OF02-6.Scaf10, whole genome shotgun sequence (151523 bp)
Overview 1 RT 1: 141442-147275 bp Neighborhood of RT #1 [141442, 147275] GcvT INT_ICEBs1_C_like RVT-Retrons Feature: gene Location: 141442-142758 bp Feature: domain Description: GcvT Location: 141544-142708 bp Feature: domain Description: GcvT Location: 1 41 544-1 42708 bp Feature: gene Location: 143224-143676 bp Feature: domain Description: INT_ICEBs1_C_like Location: 143320-143665 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 43320-1 43665 bp Feature: gene Location: 144311-145249 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 144344-144926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 44344-1 44926 bp Feature: gene Location: 145258-146349 bp Feature: gene Location: 146586-147275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GcvT (COG0404), INT_ICEBs1_C_like (cd01189), RVT-Retrons

Seq: QUEQ01000013.1 Ruminococcus sp. OF02-6 OF02-6.Scaf13, whole genome shotgun sequence (114338 bp)
Overview 1 RT 1: 10541-14735 bp Neighborhood of RT #1 [10541, 14735] RVT-DGRs Feature: gene Location: 10541-10705 bp Feature: gene Location: 10758-11381 bp Feature: gene Location: 11416-12672 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11707-12295 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11707-12 2 95 bp Feature: gene Location: 12858-13016 bp Feature: gene Location: 13056-14735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QUEQ01000018.1 Ruminococcus sp. OF02-6 OF02-6.Scaf18, whole genome shotgun sequence (104829 bp)
Overview 1 RT 1: 26096-29040 bp Neighborhood of RT #1 [26096, 29051] RVT-DGRs Avd_like Feature: gene Location: 26096-26479 bp Feature: gene Location: 26546-26929 bp Feature: gene Location: 27165-28322 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 27375-28032 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 273 75-2803 2 bp Feature: gene Location: 28316-28603 bp Feature: gene Location: 28680-29051 bp Feature: domain Description: Avd_like Location: 28734-29040 bp Feature: domain Description: Avd_like Location: 2873 4-29040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: QUEQ01000020.1 Ruminococcus sp. OF02-6 OF02-6.Scaf20, whole genome shotgun sequence (86658 bp)
Overview 1 RT 1: 16296-18845 bp Neighborhood of RT #1 [16296, 18877] XhlA RVT-DGRs Avd_like Feature: gene Location: 16296-16619 bp Feature: gene Location: 16657-16920 bp Feature: domain Description: XhlA Location: 16681-16885 bp Feature: domain Description: XhlA Location: 16681-16885 bp Feature: gene Location: 16976-18103 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17222-17879 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 17222-17879 bp Feature: gene Location: 18122-18280 bp Feature: gene Location: 18458-18877 bp Feature: domain Description: Avd_like Location: 18539-18845 bp Feature: domain Description: Avd_like Location: 18539-1884 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XhlA (pfam10779), RVT-DGRs, Avd_like (cd16376)

Seq: QUEQ01000033.1 Ruminococcus sp. OF02-6 OF02-6.Scaf33, whole genome shotgun sequence (31591 bp)
Overview 1 RT 1: 1-4434 bp Neighborhood of RT #1 [1, 4526] Helicase_C RVT_N RVT-GII YkfC ArdC Feature: gene Location: 1-408 bp Feature: domain Description: Helicase_C Location: 103-322 bp Feature: domain Description: Helicase_C Location: 103-322 bp Feature: gene Location: 987-2657 bp Feature: RT Description: RVT_N Location: 1032-1275 bp Feature: RT Description: RVT_N Location: 1032-1275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1320-1968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1320-1968 bp Feature: domain Description: YkfC Location: 2076-2271 bp Feature: domain Description: YkfC Location: 2076-2271 bp Feature: gene Location: 2658-3716 bp Feature: gene Location: 3756-4526 bp Feature: domain Description: ArdC Location: 3978-4434 bp Feature: domain Description: ArdC Location: 3978-4434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QUEQ01000051.1 Ruminococcus sp. OF02-6 OF02-6.Scaf51, whole genome shotgun sequence (2590 bp)
Overview 1 RT 1: 105-2398 bp Neighborhood of RT #1 [105, 2398] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 9-1200 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: gene Location: 2180-2398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QUEQ01000008.1 Ruminococcus sp. OF02-6 OF02-6.Scaf8, whole genome shotgun sequence (164356 bp)
Overview 1 RT 1: 23880-30289 bp 2 RT 2: 160728-164175 bp Neighborhood of RT #1 [23880, 30333] VirD4 RVT-GII T4SS-DNA_transf DUF3801 Neighborhood of RT #2 [160728, 164354] PurF PurF TSPO_MBR RVT-GII GIIM Feature: gene Location: 23880-24218 bp Feature: gene Location: 24330-25910 bp Feature: domain Description: VirD4 Location: 24339-25449 bp Feature: domain Description: VirD4 Location: 24339-25449 bp Feature: gene Location: 26044-27849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26302-27019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26302-27 019 bp Feature: gene Location: 28588-29127 bp Feature: domain Description: T4SS-DNA_transf Location: 28828-29065 bp Feature: domain Description: T4SS-DNA_transf Location: 28828-29065 bp Feature: gene Location: 29170-30333 bp Feature: domain Description: DUF3801 Location: 29269-30289 bp Feature: domain Description: DUF3801 Location: 29269-30289 bp Feature: gene Location: 160728-162140 bp Feature: domain Description: PurF Location: 160731-161880 bp Feature: domain Description: PurF Location: 1607 31-161880 bp Feature: domain Description: PurF Location: 162012-162135 bp Feature: domain Description: PurF Location: 162012-162135 bp Feature: gene Location: 162340-162849 bp Feature: domain Description: TSPO_MBR Location: 162418-162835 bp Feature: domain Description: TSPO_MBR Location: 162418-162835 bp Feature: gene Location: 162972-164354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163278-163902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16327 8-163902 bp Feature: domain Description: GIIM Note: maturase Location: 163959-164175 bp Feature: domain Description: GIIM Note: maturase Location: 163959-16417 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, T4SS-DNA_transf (pfam02534), DUF3801 (pfam12687), PurF (COG0034), TSPO_MBR (cl01379), GIIM (pfam08388)