myRT

myRT report for GCA_003478095.1_ASM347809v1

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Seq: QUEC01000014.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf14, whole genome shotgun sequence (94438 bp)
Overview 1 RT 1: 75788-81174 bp Neighborhood of RT #1 [75788, 81188] PFLA Fer4 Fer4 RVT-GII GIIM HTH_MlrA-like_sg1 PRK05748 Feature: gene Location: 75788-76630 bp Feature: domain Description: PFLA Location: 75908-76613 bp Feature: domain Description: PFLA Location: 75908-7661 3 bp Feature: gene Location: 76767-76937 bp Feature: domain Description: Fer4 Location: 76782-76842 bp Feature: domain Description: Fer4 Location: 76782-76842 bp Feature: domain Description: Fer4 Location: 76863-76926 bp Feature: domain Description: Fer4 Location: 76863-76926 bp Feature: gene Location: 77022-78353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77277-77901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77277-77901 bp Feature: domain Description: GIIM Note: maturase Location: 77958-78180 bp Feature: domain Description: GIIM Note: maturase Location: 77958-781 80 bp Feature: gene Location: 78943-79710 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 78964-79156 bp Feature: domain Description: HTH_MlrA-like_sg1 Location: 78964-791 56 bp Feature: gene Location: 79824-81188 bp Feature: domain Description: PRK05748 Location: 79839-81174 bp Feature: domain Description: PRK05748 Location: 79839-81 1 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PFLA (TIGR02493), Fer4 (pfam00037), RVT-GII, GIIM (pfam08388), HTH_MlrA-like_sg1 (cd04764), PRK05748 (replicative DNA helicase; Provisional)

Seq: QUEC01000027.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf27, whole genome shotgun sequence (61415 bp)
Overview 1 RT 1: 3191-8132 bp Neighborhood of RT #1 [3191, 8557] RVT-DGRs DUF3751 DUF2313 Feature: gene Location: 3191-3505 bp Feature: gene Location: 3562-3738 bp Feature: gene Location: 4109-5359 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4313-5072 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4313-5072 bp Feature: gene Location: 5860-7665 bp Feature: domain Description: DUF3751 Location: 5881-6313 bp Feature: domain Description: DUF3751 Location: 5881-6313 bp Feature: gene Location: 7685-8557 bp Feature: domain Description: DUF2313 Location: 7706-8132 bp Feature: domain Description: DUF2 313 Location: 7706-8132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), DUF2313 (pfam10076)

Seq: QUEC01000005.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf5, whole genome shotgun sequence (132090 bp)
Overview 1 RT 1: 7098-12761 bp Neighborhood of RT #1 [7098, 12820] GIY-YIG_COG3410 DUF2075 RVT-Retrons UDG_MUG_like OafA Feature: gene Location: 7098-8855 bp Feature: domain Description: GIY-YIG_COG3410 Location: 7215-7479 bp Feature: domain Description: GIY-YIG_COG3 410 Location: 7215-7479 bp Feature: domain Description: DUF2075 Location: 7716-8802 bp Feature: domain Description: DUF2075 Location: 7716-8802 bp Feature: gene Location: 9489-9680 bp Feature: gene Location: 9714-10406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9858-10401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9858-10401 bp Feature: gene Location: 11113-11610 bp Feature: domain Description: UDG_MUG_like Location: 11146-11554 bp Feature: domain Description: UDG_MUG_like Location: 11146-11554 bp Feature: gene Location: 11597-12820 bp Feature: domain Description: OafA Location: 11621-12761 bp Feature: domain Description: OafA Location: 11621-12761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UDG_MUG_like, OafA (COG1835), GIY-YIG_COG3410 (cd10439), DUF2075 (pfam09848), RVT-Retrons

Seq: QUEC01000050.1 Clostridium sp. AF34-10BH AF34-10BH.Scaf50, whole genome shotgun sequence (13386 bp)
Overview 1 RT 1: 143-5825 bp Neighborhood of RT #1 [143, 5899] RVT-GII GIIM Endonuclea_NS_2 CBAH Feature: gene Location: 143-484 bp Feature: gene Location: 774-1025 bp Feature: gene Location: 1829-3220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2144-2768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214 4 -2768 bp Feature: domain Description: GIIM Note: maturase Location: 2825-3035 bp Feature: domain Description: GIIM Note: maturase Location: 2825-3035 bp Feature: gene Location: 3449-4600 bp Feature: domain Description: Endonuclea_NS_2 Location: 3839-4223 bp Feature: domain Description: Endonuclea_NS_2 Location: 3839-4 223 bp Feature: gene Location: 4895-5899 bp Feature: domain Description: CBAH Location: 4901-5825 bp Feature: domain Description: CBAH Location: 4 901-5825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Endonuclea_NS_2 (pfam13930), CBAH (pfam02275)